Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 0.0e+00 1081.6 569 100.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 3.0e-230 802.0 569 74.0
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 2.6e-229 798.9 563 74.1
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.4e-226 788.5 562 73.8
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.9e-224 782.7 570 72.5
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.9e-223 777.3 570 72.3
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.6e-221 772.3 566 71.4
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.0e-218 762.7 569 69.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 3.5e-218 761.9 566 71.4
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.2e-217 759.2 565 69.2
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.2e-217 759.2 569 69.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 3.8e-217 758.4 565 70.4
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 6.5e-217 757.7 571 69.9
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-216 755.7 575 70.4
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.5e-216 755.7 566 70.0
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.2e-216 755.0 575 70.3
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.2e-215 753.4 565 71.2
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.1e-215 752.7 566 70.5
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 2.7e-215 752.3 568 71.0
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.4e-214 750.0 572 70.6
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.0e-213 746.1 567 69.7
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.3e-213 745.3 575 69.9
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 9.7e-213 743.8 567 69.5
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.3e-212 741.1 562 70.3
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 3.5e-210 735.3 499 76.0
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 2.9e-209 732.3 573 67.2
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.9e-208 729.6 571 67.6
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.2e-207 726.9 571 68.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.3e-206 722.6 567 67.0
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 2.3e-206 722.6 565 68.3
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.3e-204 714.5 571 66.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 9.1e-203 710.7 567 67.0
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.0e-202 709.5 568 66.2
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 3.5e-202 708.8 569 65.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 3.5e-202 708.8 570 66.0
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.7e-201 706.4 567 66.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.7e-201 706.4 569 65.6
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 2.3e-201 706.1 574 67.4
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 2.3e-201 706.1 573 65.4
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 5.0e-201 704.9 566 65.4
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.1e-200 703.7 568 66.0
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.9e-200 703.0 522 71.3
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 4.2e-200 701.8 567 66.1
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 7.2e-200 701.0 567 65.3
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 7.2e-200 701.0 563 66.8
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 7.2e-200 701.0 565 65.3
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 2.1e-199 699.5 569 65.0
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 3.6e-199 698.7 561 66.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 3.6e-199 698.7 561 66.1
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 6.1e-199 698.0 569 66.4
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 8.0e-199 697.6 561 66.0
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 8.0e-199 697.6 568 65.5
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.0e-198 697.2 564 65.1
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.0e-198 697.2 564 65.2
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.8e-198 696.4 567 65.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.8e-198 696.4 562 66.5
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 4.0e-198 695.3 605 63.3
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 6.8e-198 694.5 569 65.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 6.8e-198 694.5 566 64.1
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.5e-197 693.3 569 64.9
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 5.7e-197 691.4 584 64.6
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.3e-196 690.3 591 62.6
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.7e-196 689.9 570 67.2
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.7e-196 688.7 568 63.4
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 3.7e-196 688.7 569 64.9
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.1e-195 687.2 567 63.7
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 5.4e-195 684.9 506 69.4
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.0e-194 682.9 570 63.5
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 2.0e-194 682.9 572 64.3
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 5.0e-193 678.3 578 62.6
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.1e-192 677.2 564 63.5
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.1e-192 677.2 569 64.9
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.3e-192 675.2 569 64.5
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 9.5e-192 674.1 597 63.8
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.6e-191 673.3 570 64.7
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 4.0e-190 668.7 589 62.8
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 8.9e-190 667.5 570 64.0
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.4e-189 665.6 569 63.6
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.4e-189 665.6 567 63.1
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.7e-188 663.3 570 62.6
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 4.1e-187 658.7 571 62.5
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 2.7e-186 656.0 572 62.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 5.6e-184 648.3 572 62.1
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 8.0e-183 644.4 610 59.3
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.0e-177 627.5 580 60.7
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.3e-177 626.3 572 60.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 4.3e-176 622.1 504 66.1
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 9.5e-176 620.9 658 56.4
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 2.1e-175 619.8 476 67.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.3e-174 616.3 572 59.3
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 7.5e-173 611.3 471 68.4
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.3e-172 610.5 591 58.5
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.2e-170 604.0 505 65.0
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 3.9e-169 599.0 464 67.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.1e-167 593.2 503 63.8
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 2.8e-167 592.8 583 58.0
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.0e-165 586.6 568 58.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.3e-161 573.9 487 63.2
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.3e-156 557.4 549 57.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.2e-151 538.5 571 55.7
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 7.6e-149 531.6 572 52.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.2e-148 530.0 349 77.1
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.1e-147 527.7 590 53.6
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 3.5e-146 522.7 407 69.8
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.4e-142 510.8 478 58.8
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 9.0e-142 508.1 349 73.4
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 4.5e-141 505.8 542 51.7
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.2e-140 503.4 513 54.0
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.9e-131 473.8 335 71.3
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 4.3e-128 462.6 403 63.3
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.2e-127 460.3 525 52.8
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 3.1e-118 429.9 305 73.4
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.4e-115 421.0 365 61.6
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 3.6e-114 416.4 487 49.3
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.8e-113 414.1 421 58.0
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-110 404.8 243 84.4
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 2.9e-108 396.7 394 57.4
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.0e-108 396.0 242 81.0
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.0e-108 396.0 242 81.0
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.7e-100 370.9 234 79.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 4.2e-99 366.3 419 52.3
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.0e-97 361.7 424 51.9
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.8e-94 350.9 413 50.6
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 7.0e-94 349.0 279 62.7
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.2e-91 339.7 192 87.0
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.2e-85 321.6 331 53.2
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 5.9e-85 319.3 571 36.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 8.3e-79 298.9 159 92.5
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 7.8e-77 292.4 579 36.1
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.0e-76 292.0 383 48.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 4.1e-62 243.4 462 38.3
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 7.8e-61 239.2 143 80.4
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.5e-59 235.0 143 83.2
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.8e-58 230.7 143 81.1
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 2.9e-55 220.7 239 54.8
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 3.7e-55 220.3 134 82.1
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.3e-55 219.2 128 86.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-50 204.1 551 31.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.4e-49 201.8 238 47.9
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.8e-41 174.9 169 60.9
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 2.9e-39 167.5 500 30.2
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.8e-34 150.2 88 84.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-32 145.2 92 79.3
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 6.2e-26 123.2 210 39.5
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.4e-24 117.5 181 43.1
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.8e-24 116.7 122 53.3
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.7e-23 115.2 246 35.4
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-20 105.1 132 47.7
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.9e-19 101.7 257 30.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-18 97.8 255 29.8
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.4e-17 95.5 52 90.4
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-17 95.1 88 60.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 1.7e-15 88.6 45 91.1
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 1.5e-08 65.5 317 27.4
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.7e-07 62.0 199 28.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 2.5e-06 58.2 32 93.8


User provided reference genes

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