Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 0.0e+00 1371.3 725 100.0
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 5.9e-138 495.7 733 47.7
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.2e-126 456.1 771 43.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.5e-120 437.2 798 42.0
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 4.0e-118 429.9 781 41.9
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.8e-116 423.7 750 42.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.1e-115 420.2 784 41.8
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.3e-113 414.8 768 42.1
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.0e-105 388.7 754 40.6
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.4e-101 373.6 763 38.5
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 8.3e-100 369.0 772 40.7
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.3e-97 361.7 785 38.3
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 6.6e-97 359.4 737 39.1
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.9e-96 357.8 759 38.7
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.9e-96 357.8 759 39.0
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 6.8e-94 349.4 357 62.2
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 9.8e-93 345.5 784 36.5
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 6.4e-92 342.8 753 37.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.9e-91 341.3 694 40.1
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 7.0e-91 339.3 755 40.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.3e-89 335.1 794 36.3
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.3e-89 334.3 761 37.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.1e-87 327.8 776 36.3
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.6e-87 327.0 755 36.8
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 3.1e-86 323.9 781 37.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.0e-85 321.2 807 35.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.9e-83 314.7 775 36.8
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.0e-82 309.7 762 36.2
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.2e-79 302.0 735 35.8
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.8e-79 300.8 778 36.5
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 3.6e-79 300.4 774 34.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 3.1e-78 297.4 782 36.1
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.4e-77 293.9 778 36.2
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.9e-77 292.4 791 35.7
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.3e-76 292.0 755 34.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.2e-76 291.2 766 34.6
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 3.8e-76 290.4 761 35.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.4e-75 287.7 738 36.3
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 4.2e-75 287.0 729 35.5
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 6.0e-74 283.1 774 35.9
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.5e-72 278.5 704 34.8
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 7.3e-72 276.2 697 36.6
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 9.6e-72 275.8 769 34.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.4e-70 271.9 670 36.0
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 2.4e-70 271.2 756 33.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 4.0e-70 270.4 573 38.7
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.5e-69 268.5 529 39.7
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 7.1e-67 259.6 707 34.4
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 4.6e-66 256.9 766 33.6
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 7.8e-66 256.1 428 43.5
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.1e-64 252.3 726 33.9
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.9e-64 251.5 468 41.2
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.6e-63 248.4 729 32.9
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.8e-63 247.7 467 41.8
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.6e-63 247.3 744 33.7
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.8e-62 245.0 728 32.4
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 6.4e-60 236.5 463 43.0
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 5.4e-59 233.4 683 35.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 6.0e-58 229.9 849 30.4
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 3.9e-57 227.3 462 40.3
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.1e-56 225.7 800 31.1
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-56 225.7 567 35.6
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 2.8e-55 221.1 835 30.9
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 6.2e-55 219.9 418 40.4
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.4e-54 218.8 469 39.7
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.8e-54 218.4 813 31.5
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 2.4e-54 218.0 645 32.6
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 9.0e-54 216.1 636 35.2
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.2e-53 215.7 476 39.3
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.2e-53 215.7 635 33.7
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.5e-53 215.3 269 49.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-50 205.7 767 29.2
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-50 205.3 570 35.1
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 8.7e-49 199.5 681 30.2
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 8.7e-49 199.5 707 31.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 9.6e-48 196.1 294 46.3
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 2.8e-47 194.5 758 28.5
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.4e-46 192.2 442 39.6
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 2.4e-46 191.4 545 32.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.0e-46 190.7 778 28.9
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.4e-45 187.6 524 33.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 5.8e-45 186.8 376 38.6
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 7.6e-45 186.4 384 40.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 6.5e-44 183.3 360 40.3
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 4.2e-43 180.6 512 32.4
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-42 178.7 761 30.5
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-41 175.3 536 34.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-40 171.8 161 59.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.9e-40 171.8 760 29.7
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.5e-40 171.4 747 31.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 3.3e-40 171.0 336 38.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.8e-39 167.9 768 27.5
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 6.3e-39 166.8 537 32.8
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.4e-38 165.6 732 29.0
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.1e-38 164.5 140 60.7
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 4.1e-38 164.1 305 41.0
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 5.3e-38 163.7 537 31.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 9.0e-38 162.9 283 40.6
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 1.5e-37 162.2 316 38.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.3e-36 159.1 402 32.8
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.8e-36 157.5 568 29.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.1e-35 156.0 283 39.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 7.2e-35 153.3 328 38.4
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.6e-34 152.1 279 39.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.6e-34 152.1 279 39.4
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.1e-34 151.8 268 39.6
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.0e-33 147.9 261 41.8
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 3.9e-33 147.5 309 36.2
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.9e-33 147.5 521 31.9
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 3.9e-33 147.5 339 37.2
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 6.7e-33 146.7 400 34.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.1e-32 146.0 425 33.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.3e-31 142.5 336 37.2
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.3e-31 140.2 742 28.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 8.2e-31 139.8 265 37.7
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.1e-30 139.4 465 30.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-30 139.4 262 37.0
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.4e-30 139.0 257 38.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.1e-30 137.5 336 36.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 4.1e-30 137.5 362 35.4
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 9.1e-30 136.3 510 30.4
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.2e-29 136.0 394 33.2
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.0e-29 135.2 367 32.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-27 128.3 265 35.8
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.5e-27 128.3 269 36.4
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.6e-26 125.6 190 43.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 7.9e-26 123.2 228 39.9
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.9e-26 123.2 353 31.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.9e-25 120.9 347 31.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.1e-24 119.4 190 43.2
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.0e-24 118.6 177 40.7
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 7.4e-24 116.7 152 44.1
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-23 115.9 529 30.6
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 4.1e-22 110.9 551 28.9
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 4.5e-21 107.5 256 34.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 5.9e-21 107.1 557 28.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 8.5e-20 103.2 160 39.4
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 9.4e-19 99.8 208 35.1
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.0e-17 94.7 159 37.1
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.0e-17 94.7 159 37.1
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 8.8e-17 93.2 60 71.7
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-16 92.8 257 30.4
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.6e-16 91.7 274 30.3
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 7.4e-16 90.1 84 48.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 9.7e-16 89.7 182 32.4
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.8e-15 87.4 164 37.2
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.8e-14 85.5 536 25.2
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 4.1e-14 84.3 106 38.7
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 5.9e-13 80.5 330 27.9
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.3e-12 79.3 59 66.1
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-12 78.6 138 40.6
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 9.4e-11 73.2 220 34.1
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 6.1e-10 70.5 470 25.1
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 6.1e-10 70.5 413 25.4
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.4e-09 69.3 55 60.0
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 2.3e-09 68.6 157 39.5
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.0e-09 68.2 56 60.7
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 6.8e-09 67.0 91 44.0
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 8.3e-07 60.1 76 46.1
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.4e-06 58.5 131 38.2


User provided reference genes

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