Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 0.0e+00 1969.1 1022 100.0
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 4.1e-169 599.7 1028 40.6
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 7.0e-153 545.8 1196 36.1
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 4.8e-77 293.9 1058 29.2
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 2.9e-66 258.1 1363 25.8
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 3.3e-62 244.6 1110 27.1
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 8.8e-55 219.9 975 27.8
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 4.4e-54 217.6 1095 26.4
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 5.9e-51 207.2 1063 27.1
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 8.5e-50 203.4 959 26.7
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 1.9e-49 202.2 953 27.7
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 7.2e-49 200.3 831 27.9
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 1.2e-48 199.5 1039 27.2
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 3.0e-47 194.9 605 30.7
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 6.7e-47 193.7 1056 25.9
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 4.8e-45 187.6 1083 24.8
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 2.4e-44 185.3 1046 25.2
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 3.8e-42 177.9 699 27.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 5.7e-38 164.1 386 35.0
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 2.8e-37 161.8 1030 24.9
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.1e-36 158.3 404 34.9
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.2e-35 156.4 392 34.7
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.1e-33 149.8 1052 24.5
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 4.2e-33 147.9 197 44.2
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 6.1e-32 144.1 656 26.2
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 8.0e-32 143.7 128 58.6
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.4e-31 142.9 1041 25.2
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 3.4e-30 138.3 173 43.9
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 9.8e-30 136.7 156 49.4
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 2.8e-29 135.2 303 35.0
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 4.9e-29 134.4 94 66.0
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 4.9e-29 134.4 180 45.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 1.4e-28 132.9 183 43.7
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 3.1e-28 131.7 373 33.0
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 3.1e-28 131.7 79 72.2
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 3.1e-28 131.7 302 36.4
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 9.2e-28 130.2 145 46.2
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 9.2e-28 130.2 76 73.7
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.2e-27 129.8 145 46.2
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 1.6e-27 129.4 129 49.6
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.6e-27 129.4 389 30.3
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 5.9e-27 127.5 119 55.5
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 7.8e-27 127.1 130 53.8
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.0e-26 126.7 122 54.1
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 2.9e-26 125.2 451 28.8
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 3.8e-26 124.8 80 67.5
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 3.8e-26 124.8 271 36.5
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 5.0e-26 124.4 205 40.5
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 6.6e-26 124.0 325 33.2
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 1.1e-25 123.2 74 77.0
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.3e-25 121.7 81 71.6
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 3.3e-25 121.7 79 67.1
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 5.6e-25 120.9 286 33.6
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 9.5e-25 120.2 403 28.5
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.2e-24 119.8 179 43.0
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.2e-24 119.8 285 31.6
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.6e-24 119.4 249 35.3
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 2.1e-24 119.0 156 46.8
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.1e-24 119.0 216 39.4
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.8e-24 118.6 87 67.8
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 2.8e-24 118.6 131 52.7
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 2.8e-24 118.6 247 37.2
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 4.7e-24 117.9 275 33.8
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 4.7e-24 117.9 213 38.0
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 8.0e-24 117.1 187 38.0
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 3.0e-23 115.2 177 41.2
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 8.9e-23 113.6 389 29.0
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 8.9e-23 113.6 66 78.8
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 1.2e-22 113.2 76 71.1
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 1.5e-22 112.8 271 32.1
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 2.0e-22 112.5 409 28.6
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 1.3e-21 109.8 132 46.2
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.3e-21 109.8 126 51.6
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.7e-21 109.4 376 31.4
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.9e-21 108.6 119 51.3
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 4.1e-20 104.8 75 72.0
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 1.2e-19 103.2 941 25.7
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 1.6e-19 102.8 152 39.5
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 3.9e-18 98.2 107 47.7
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 5.6e-17 94.4 367 26.7
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 1.2e-16 93.2 88 52.3
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.1e-16 92.4 88 52.3
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 2.3e-15 89.0 137 40.1
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 8.9e-15 87.0 67 64.2
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 2.0e-14 85.9 57 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 3.4e-14 85.1 85 49.4
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 4.4e-14 84.7 69 58.0
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.2e-11 76.6 260 32.3
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 2.7e-11 75.5 353 28.9
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 3.5e-11 75.1 63 57.1
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 6.6e-10 70.9 65 56.9
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 8.6e-10 70.5 118 44.1
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.1e-09 70.1 939 23.7
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 5.6e-09 67.8 210 31.4
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.2e-08 66.6 42 66.7
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.8e-08 65.5 67 49.3


User provided reference genes

Program Settings