Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10027330m.g Citrus clementina HOM05D000311 ORTHO05D000183 5.2e-131 472.2 540 100.0
Ciclev10027505m.g Citrus clementina HOM05D000311 ORTHO05D000183 4.6e-119 432.6 556 89.2
Ciclev10025198m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.0e-94 350.1 450 91.1
Ciclev10025133m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.1e-59 233.8 455 76.9
Ciclev10025153m.g Citrus clementina HOM05D000311 ORTHO05D000183 4.1e-59 233.4 454 75.8
Ciclev10027537m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.0e-58 231.1 576 68.4
Ciclev10025140m.g Citrus clementina HOM05D000311 ORTHO05D000183 9.4e-56 222.2 455 76.0
Ciclev10024794m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.3e-53 213.8 546 72.7
Ciclev10025139m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.2e-47 195.3 455 73.0
Ciclev10026980m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.0e-46 190.7 307 80.1
Ciclev10027472m.g Citrus clementina HOM05D000311 ORTHO05D000183 6.7e-38 162.9 475 70.1
Ciclev10027313m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.7e-26 124.4 564 62.8
Ciclev10024083m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.4e-19 101.3 562 58.7
Ciclev10025042m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.5e-18 97.4 203 61.1
Ciclev10027556m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.9e-17 94.4 208 60.6
Ciclev10027581m.g Citrus clementina HOM05D000311 ORTHO05D000183 7.2e-16 89.7 108 48.1
Ciclev10024777m.g Citrus clementina HOM05D000311 ORTHO05D000183 9.5e-16 89.4 108 47.2
Ciclev10025151m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.6e-15 88.6 200 59.5
Ciclev10025050m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.8e-14 85.1 567 46.4
Ciclev10027344m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.0e-14 84.3 277 40.4
Ciclev10027492m.g Citrus clementina HOM05D000311 ORTHO05D000183 6.3e-12 76.6 101 42.6
C02p31700 Brassica napus HOM05D000311 ORTHO05D000183 2.4e-11 74.7 124 37.1
Thecc.06G032600 Theobroma cacao HOM05D000311 ORTHO05D000183 2.4e-11 74.7 200 28.5
TAR626G1355 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.1e-11 73.9 196 54.6
CARHR053860 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.6e-10 72.0 106 38.7
Ciclev10027124m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.7e-10 71.2 100 43.0
CARHR185740 Cardamine hirsuta HOM05D000311 ORTHO05D000183 5.9e-10 70.1 106 41.5
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 5.9e-10 70.1 105 41.9
AT1G07390 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 7.8e-10 69.7 103 40.8
CARHR019250 Cardamine hirsuta HOM05D000311 ORTHO05D000183 7.8e-10 69.7 115 36.5
A06p14740 Brassica napus HOM05D000311 ORTHO05D000183 1.7e-09 68.6 70 45.7
BolC2t09198H Brassica oleracea HOM05D000311 ORTHO05D000183 2.9e-09 67.8 103 36.9
A01p28210 Brassica napus HOM05D000311 ORTHO05D000183 3.9e-09 67.4 88 39.8
BcaB07g31882 Brassica carinata HOM05D000311 ORTHO05D000183 5.0e-09 67.0 122 33.6
Haze_16592 Corylus avellana HOM05D000311 ORTHO05D000183 5.0e-09 67.0 203 55.7
TAR375G0143 Trochodendron aralioides HOM05D000311 ORTHO05D000183 5.0e-09 67.0 107 36.4
BcaB05g24838 Brassica carinata HOM05D000311 ORTHO05D000183 6.6e-09 66.6 111 36.0
BcaC09g49504 Brassica carinata HOM05D000311 ORTHO05D000183 6.6e-09 66.6 111 36.0
Carub.0001s0670 Capsella rubella HOM05D000311 ORTHO05D000183 6.6e-09 66.6 68 51.5
CARHR182190 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.6e-09 66.6 109 43.1
GSVIVG01015972001 Vitis vinifera HOM05D000311 ORTHO05D000183 6.6e-09 66.6 195 54.9
BcaB04g20190 Brassica carinata HOM05D000311 ORTHO05D000183 1.5e-08 65.5 110 35.5
C01p35810 Brassica napus HOM05D000311 ORTHO05D000183 1.5e-08 65.5 111 35.1
BolC1t03541H Brassica oleracea HOM05D000311 ORTHO05D000183 1.5e-08 65.5 111 35.1
CARHR220400 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.5e-08 65.5 103 35.9
AL1G17550 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.9e-08 65.1 103 38.8
A02p19140 Brassica napus HOM05D000311 ORTHO05D000183 1.9e-08 65.1 113 36.3
BraA02t06964Z Brassica rapa HOM05D000311 ORTHO05D000183 1.9e-08 65.1 113 36.3
Manes.11G060199 Manihot esculenta HOM05D000311 ORTHO05D000183 1.9e-08 65.1 77 44.2
CARHR007110 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.5e-08 64.7 103 38.8
Medtr4g016910 Medicago truncatula HOM05D000311 ORTHO05D000183 2.5e-08 64.7 102 39.2
BcaC08g46848 Brassica carinata HOM05D000311 ORTHO05D000183 3.3e-08 64.3 77 39.0
AT1G58190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 4.3e-08 63.9 102 35.3
BcaB07g31881 Brassica carinata HOM05D000311 ORTHO05D000183 4.3e-08 63.9 70 47.1
CARHR053840 Cardamine hirsuta HOM05D000311 ORTHO05D018764 5.6e-08 63.5 89 38.2
Ciclev10025126m.g Citrus clementina HOM05D000311 ORTHO05D000183 5.6e-08 63.5 117 37.6
Haze_16587 Corylus avellana HOM05D000311 ORTHO05D000183 5.6e-08 63.5 200 55.0
MELO3C023439.2 Cucumis melo HOM05D000311 ORTHO05D000183 5.6e-08 63.5 51 58.8
MBI18_g17395_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 5.6e-08 63.5 107 33.6
MBI18_g41687_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 5.6e-08 63.5 107 33.6
TAR626G0484 Trochodendron aralioides HOM05D000311 ORTHO05D000183 5.6e-08 63.5 104 37.5
A06p14730 Brassica napus HOM05D000311 ORTHO05D000183 7.3e-08 63.2 70 47.1
BraA06t24597Z Brassica rapa HOM05D000311 ORTHO05D000183 7.3e-08 63.2 55 49.1
THA.LOC104800714 Tarenaya hassleriana HOM05D000311 ORTHO05D000183 7.3e-08 63.2 198 54.0
BcaB02g07799 Brassica carinata HOM05D000311 ORTHO05D000183 9.5e-08 62.8 103 34.0
BcaB05g24837 Brassica carinata HOM05D000311 ORTHO05D000183 9.5e-08 62.8 54 50.0
CiPaw.04G177900 Carya illinoinensis HOM05D000311 ORTHO05D000183 9.5e-08 62.8 193 49.7
Medtr4g015960 Medicago truncatula HOM05D000366 ORTHO05D001950 9.5e-08 62.8 101 38.6
QL05p014051 Quercus lobata HOM05D000311 ORTHO05D000183 9.5e-08 62.8 201 53.7
CARHR067420 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.2e-07 62.4 97 38.1
Manes.11G060231 Manihot esculenta HOM05D000311 ORTHO05D000183 1.2e-07 62.4 76 46.1
TAR626G1673 Trochodendron aralioides HOM05D000311 ORTHO05D000183 1.2e-07 62.4 108 35.2
Atru.chr2.3348 Acer truncatum HOM05D000311 ORTHO05D000183 1.6e-07 62.0 182 29.7
C08p50610 Brassica napus HOM05D000311 ORTHO05D000183 1.6e-07 62.0 103 36.9
BolC8t52589H Brassica oleracea HOM05D000311 ORTHO05D000183 1.6e-07 62.0 103 36.9
Thhalv10023329m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.6e-07 62.0 87 36.8
CiPaw.04G177700 Carya illinoinensis HOM05D000311 ORTHO05D000183 2.1e-07 61.6 193 50.3
BcaC07g42006 Brassica carinata HOM05D000311 ORTHO05D000183 2.8e-07 61.2 68 48.5
PGR064G0010 Punica granatum HOM05D000311 ORTHO05D000183 2.8e-07 61.2 104 37.5
QL02p090841 Quercus lobata HOM05D000311 ORTHO05D000183 2.8e-07 61.2 108 39.8
A09p66470 Brassica napus HOM05D000311 ORTHO05D000183 3.6e-07 60.8 108 38.0
BraA09t41984Z Brassica rapa HOM05D000311 ORTHO05D000183 3.6e-07 60.8 108 38.0
Sp1g06140 Schrenkiella parvula HOM05D000311 ORTHO05D000183 3.6e-07 60.8 44 63.6
GSVIVG01017407001 Vitis vinifera HOM05D000311 ORTHO05D000183 3.6e-07 60.8 193 48.7
C06p33550 Brassica napus HOM05D000311 ORTHO05D000183 4.7e-07 60.5 64 48.4
CARHR006900 Cardamine hirsuta HOM05D000311 ORTHO05D000183 4.7e-07 60.5 66 48.5
Sp1g29920 Schrenkiella parvula HOM05D000311 ORTHO05D000183 4.7e-07 60.5 87 41.4
AL1G17540 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 6.1e-07 60.1 69 46.4
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 6.1e-07 60.1 65 43.1
A07p40030 Brassica napus HOM05D000311 ORTHO05D000183 6.1e-07 60.1 50 50.0
BolC6t37292H Brassica oleracea HOM05D000311 ORTHO05D000183 6.1e-07 60.1 96 35.4
BraA07t30591Z Brassica rapa HOM05D000311 ORTHO05D000183 6.1e-07 60.1 65 43.1
AT1G74190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 8.0e-07 59.7 69 42.0
Haze_16379 Corylus avellana HOM05D000311 ORTHO05D000183 8.0e-07 59.7 201 27.4
MELO3C023440.2 Cucumis melo HOM05D000311 ORTHO05D000183 8.0e-07 59.7 50 56.0
Manes.11G060055 Manihot esculenta HOM05D000311 ORTHO05D000183 8.0e-07 59.7 108 37.0
AL5G34150 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.0e-06 59.3 103 34.0
AT1G74170 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.0e-06 59.3 107 37.4
BcaB05g24841 Brassica carinata HOM05D000311 ORTHO05D000183 1.0e-06 59.3 106 33.0
BcaC08g45603 Brassica carinata HOM05D000311 ORTHO05D000183 1.0e-06 59.3 64 45.3
MBI18_g41218_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.0e-06 59.3 108 35.2
QL04p004418 Quercus lobata HOM05D000311 ORTHO05D000183 1.0e-06 59.3 110 37.3
TAR383G0953 Trochodendron aralioides HOM05D000153 ORTHO05D000118 1.0e-06 59.3 77 41.6
AT3G53240 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.4e-06 58.9 103 33.0
BcaNung00102 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-06 58.9 105 36.2
Thhalv10018087m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 1.4e-06 58.9 112 37.5
Nn2g15942 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.4e-06 58.9 109 35.8
PGR064G0014 Punica granatum HOM05D000311 ORTHO05D000183 1.4e-06 58.9 108 36.1
Aa31LG4G4490 Aethionema arabicum HOM05D000311 ORTHO05D000183 1.8e-06 58.5 173 45.1
AL1G17310 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.8e-06 58.5 66 45.5
AL2G34080 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.8e-06 58.5 69 42.0
AL3G12670 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.8e-06 58.5 66 45.5
C06p38520 Brassica napus HOM05D000311 ORTHO05D000183 1.8e-06 58.5 101 34.7
CSS0002520 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.8e-06 58.5 81 35.8
CsaV3_7G032230 Cucumis sativus L. HOM05D000311 ORTHO05D000183 1.8e-06 58.5 49 55.1
MBI18_g17975_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.8e-06 58.5 103 33.0
MBI18_g40622_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.8e-06 58.5 103 33.0
Manes.11G059336 Manihot esculenta HOM05D000311 ORTHO05D000183 1.8e-06 58.5 108 36.1
Oeu010082.1 Olea europaea HOM05D000311 ORTHO05D000183 1.8e-06 58.5 59 50.8
C06p21070 Brassica napus HOM05D000311 ORTHO05D000183 2.3e-06 58.2 95 34.7
C06p48370 Brassica napus HOM05D000311 ORTHO05D000183 2.3e-06 58.2 69 39.1
BolC4t27071H Brassica oleracea HOM05D000311 ORTHO05D000183 2.3e-06 58.2 108 32.4
CiPaw.01G103300 Carya illinoinensis HOM05D000311 ORTHO05D000183 2.3e-06 58.2 202 53.5
Ciclev10027016m.g Citrus clementina HOM05D000311 ORTHO05D000183 2.3e-06 58.2 194 53.1
CsaV3_7G032220 Cucumis sativus L. HOM05D000311 ORTHO05D000183 2.3e-06 58.2 49 55.1
Thhalv10018074m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 2.3e-06 58.2 88 38.6
MBI18_g27853_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 2.3e-06 58.2 105 33.3
A07p21470 Brassica napus HOM05D000311 ORTHO05D000183 3.1e-06 57.8 95 34.7
BraA07t29834Z Brassica rapa HOM05D000311 ORTHO05D000183 3.1e-06 57.8 95 34.7
Manes.04G110400 Manihot esculenta HOM05D000311 ORTHO05D000183 3.1e-06 57.8 185 42.2
Manes.11G060000 Manihot esculenta HOM05D000311 ORTHO05D000183 3.1e-06 57.8 108 36.1
Nn8g39655 Nelumbo nucifera HOM05D000311 ORTHO05D000183 3.1e-06 57.8 109 33.9
QL04p004370 Quercus lobata HOM05D000311 ORTHO05D000183 3.1e-06 57.8 118 36.4
GSVIVG01013974001 Vitis vinifera HOM05D000311 ORTHO05D000183 3.1e-06 57.8 68 42.6
BcaB06g28060 Brassica carinata HOM05D000311 ORTHO05D000183 4.0e-06 57.4 109 32.1
MELO3C023441.2 Cucumis melo HOM05D000311 ORTHO05D000183 4.0e-06 57.4 49 53.1
Medtr4g015930 Medicago truncatula HOM05D000311 ORTHO05D000183 4.0e-06 57.4 104 36.5
Medtr4g016850 Medicago truncatula HOM05D000311 ORTHO05D000183 4.0e-06 57.4 109 36.7
TAR128G0001 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.0e-06 57.4 206 51.0
GSVIVG01012819001 Vitis vinifera HOM05D000311 ORTHO05D000183 4.0e-06 57.4 199 53.8
BcaC05g24569 Brassica carinata HOM05D000311 ORTHO05D000183 5.2e-06 57.0 70 40.0
C08p50630 Brassica napus HOM05D000311 ORTHO05D000183 5.2e-06 57.0 68 45.6
CSS0001163 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 5.2e-06 57.0 73 38.4
CARHR007120 Cardamine hirsuta HOM05D000311 ORTHO05D000183 5.2e-06 57.0 101 35.6
MELO3C020782.2 Cucumis melo HOM05D000311 ORTHO05D000183 5.2e-06 57.0 50 54.0
Thhalv10018082m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 5.2e-06 57.0 110 34.5
Thhalv10023377m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 5.2e-06 57.0 101 34.7
Oeu029035.2 Olea europaea HOM05D000311 ORTHO05D000183 5.2e-06 57.0 106 33.0
C02p31730 Brassica napus HOM05D000311 ORTHO05D000183 6.8e-06 56.6 47 53.2
C06p48340 Brassica napus HOM05D000311 ORTHO05D000183 6.8e-06 56.6 109 31.2
BolC6t39865H Brassica oleracea HOM05D000311 ORTHO05D000183 6.8e-06 56.6 109 31.2
CARHR067410 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.8e-06 56.6 105 38.1
CiPaw.12G006600 Carya illinoinensis HOM05D000311 ORTHO05D000183 6.8e-06 56.6 198 54.5
QL05p012871 Quercus lobata HOM05D000311 ORTHO05D000183 6.8e-06 56.6 200 53.5
Hund09290 Selenicereus undatus HOM05D000311 ORTHO05D000183 6.8e-06 56.6 72 43.1
TWI34G1226 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 6.8e-06 56.6 109 33.0
TAR383G0685 Trochodendron aralioides HOM05D000311 ORTHO05D000183 6.8e-06 56.6 205 48.8
TAR636G1261 Trochodendron aralioides HOM05D000311 ORTHO05D000183 6.8e-06 56.6 106 32.1
Actinidia21924 Actinidia chinensis HOM05D000311 ORTHO05D000183 8.9e-06 56.2 64 46.9
BcaC02g08350 Brassica carinata HOM05D000311 ORTHO05D000183 8.9e-06 56.2 108 31.5
BcaC03g15487 Brassica carinata HOM05D000311 ORTHO05D000183 8.9e-06 56.2 103 33.0
CARHR067550 Cardamine hirsuta HOM05D000311 ORTHO05D000183 8.9e-06 56.2 102 35.3
Haze_20326 Corylus avellana HOM05D000311 ORTHO05D000183 8.9e-06 56.2 199 52.8
Thhalv10010101m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 8.9e-06 56.2 105 36.2
Nn2g15962 Nelumbo nucifera HOM05D000311 ORTHO05D000183 8.9e-06 56.2 116 33.6
Sed0026723 Sechium edule HOM05D000311 ORTHO05D000183 8.9e-06 56.2 50 54.0
VMungo0331G1915 Vigna mungo HOM05D000311 ORTHO05D000183 8.9e-06 56.2 197 51.8


User provided reference genes

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