Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.3e-114 416.4 210 100.0
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 3.5e-83 312.0 252 69.8
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 4.0e-71 271.9 220 68.6
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.4e-63 246.1 161 80.1
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 3.8e-61 238.8 209 65.1
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 3.3e-57 225.7 252 54.4
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 4.3e-57 225.3 252 54.0
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 7.1e-52 208.0 242 50.8
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 4.3e-41 172.2 120 75.0
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-40 169.9 239 45.2
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 1.5e-38 163.7 212 47.2
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.7e-37 160.2 215 43.7
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 5.5e-36 155.2 215 42.8
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 2.7e-35 152.9 215 42.8
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 6.0e-35 151.8 253 37.9
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 1.3e-34 150.6 215 42.3
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 1.3e-34 150.6 215 42.3
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 1.8e-34 150.2 247 39.3
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.4e-31 140.6 238 36.6
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 5.3e-31 138.7 203 43.3
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 5.3e-31 138.7 217 42.9
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 9.0e-31 137.9 217 39.6
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 1.5e-30 137.1 204 45.1
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 7.6e-30 134.8 207 41.5
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 1.0e-29 134.4 239 39.7
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 1.7e-29 133.7 142 53.5
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 5.0e-29 132.1 75 84.0
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.9e-28 130.2 222 39.2
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 3.2e-28 129.4 165 47.3
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 5.5e-28 128.6 207 39.6
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 7.1e-28 128.3 212 41.0
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 4.6e-27 125.6 207 39.1
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 2.3e-26 123.2 217 38.2
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 1.5e-25 120.6 245 32.7
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.5e-25 119.8 220 35.9
Atru.chr4.1791 Acer truncatum HOM05D007592 ORTHO05D004645 3.3e-25 119.4 105 62.9
Atru.chr6.1370 Acer truncatum HOM05D007592 ORTHO05D004645 3.3e-25 119.4 118 55.1
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 7.4e-25 118.2 248 35.5
Oeu023351.1 Olea europaea HOM05D007592 ORTHO05D004645 9.7e-25 117.9 204 39.7
Atru.chr3.1639 Acer truncatum HOM05D007592 ORTHO05D004645 1.6e-24 117.1 131 51.9
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 1.4e-23 114.0 129 49.6
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 1.7e-21 107.1 211 34.6
Atru.chr10.191 Acer truncatum HOM05D007592 ORTHO05D004645 3.8e-21 105.9 100 60.0
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 1.6e-19 100.5 211 33.6
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 6.1e-19 98.6 193 37.8
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.1e-19 98.6 254 31.9
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 7.9e-19 98.2 205 35.1
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 1.4e-18 97.4 70 65.7
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-18 97.1 254 31.5
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-18 97.1 254 31.5
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-18 97.1 254 31.5
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-18 97.1 254 31.5
Oeu019651.1 Olea europaea HOM05D007592 ORTHO05D004645 2.3e-18 96.7 190 35.8
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.9e-18 95.9 241 34.0
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.7e-18 95.1 254 31.1
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.8e-18 94.7 254 31.1
Manes.03G096216 Manihot esculenta HOM05D007592 ORTHO05D004645 8.8e-18 94.7 170 38.8
Oeu053537.1 Olea europaea HOM05D007592 ORTHO05D004645 8.8e-18 94.7 103 52.4
AL1G54420 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.1e-17 94.4 108 44.4
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 1.5e-17 94.0 271 31.0
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 2.0e-17 93.6 198 37.4
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 5.7e-17 92.0 246 32.1
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 5.7e-17 92.0 101 49.5
AT2G13760 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.3e-16 90.9 171 35.7
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 6.3e-16 88.6 69 59.4
AT1G66235 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.1e-15 87.8 194 34.0
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.1e-15 87.8 246 31.3
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-15 87.8 66 60.6
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 1.1e-15 87.8 66 60.6
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 1.4e-15 87.4 60 63.3
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.4e-15 86.7 104 46.2
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.1e-15 86.3 200 32.5
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 3.1e-15 86.3 157 40.8
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 4.1e-15 85.9 108 46.3
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 9.1e-15 84.7 221 31.7
SalBow3G0485 Salvia bowleyana HOM05D020195 ORTHO05D023117 1.2e-14 84.3 162 41.4
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-14 84.0 240 30.4
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 2.0e-14 83.6 223 30.5
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 1.7e-13 80.5 150 42.0
Manes.16G106550 Manihot esculenta HOM05D007592 ORTHO05D004645 1.7e-13 80.5 149 36.9
C02p48070 Brassica napus HOM05D033289 ORTHO05D033072 1.4e-12 77.4 146 39.0
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 7.2e-12 75.1 124 41.9
CARHR184030 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.1e-11 73.6 108 38.0
Atru.chr2.3826 Acer truncatum HOM05D007592 ORTHO05D004645 3.6e-11 72.8 81 50.6
BraA06t26442Z Brassica rapa HOM05D007592 ORTHO05D004645 1.0e-10 71.2 76 47.4
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.0e-10 71.2 230 28.7
Atru.chr7.1149 Acer truncatum HOM05D007592 ORTHO05D004645 1.8e-10 70.5 114 39.5
AL5G14150 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 3.0e-10 69.7 61 49.2
Rhsim01G0124200 Rhododendron simsii HOM05D000422 ORTHO05D004645 3.9e-10 69.3 186 30.6
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 5.1e-10 68.9 101 39.6
AL1G39540 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.0e-09 67.0 61 45.9
Oeu052134.1 Olea europaea HOM05D001085 ORTHO05D000895 2.0e-09 67.0 98 44.9
CARHR180790 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.6e-09 66.6 109 37.6
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 4.4e-09 65.9 66 43.9
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 7.4e-09 65.1 69 42.0
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 9.7e-09 64.7 103 36.9
CANSAT11G0484 Cannabis sativa HOM05D007743 ORTHO05D004645 9.7e-09 64.7 129 35.7
BcaNung00662 Brassica carinata HOM05D007592 ORTHO05D004645 1.7e-08 63.9 155 32.3
FAN09G0506 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.7e-08 63.9 241 28.6
SalBow5G2620 Salvia bowleyana HOM05D020195 ORTHO05D023117 2.2e-08 63.5 117 41.9
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 2.8e-08 63.2 66 42.4
CSS0033894 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.8e-08 62.4 162 31.5
CSS0041981 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.8e-08 62.4 162 31.5
PGSC0003DMG400013032 Solanum tuberosum HOM05D007592 ORTHO05D004645 4.8e-08 62.4 156 33.3
DCAR_014165 Daucus carota HOM05D007592 ORTHO05D004645 6.3e-08 62.0 80 48.8
Atru.ctg24.16 Acer truncatum HOM05D007592 ORTHO05D004645 8.2e-08 61.6 167 31.1
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.2 140 34.3
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.2 140 34.3
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.2 140 34.3
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.2 140 34.3
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.2 140 34.3
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 1.4e-07 60.8 102 36.3
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 1.8e-07 60.5 116 34.5
CSS0001664 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.1e-07 59.3 57 47.4
Atru.chr12.1932 Acer truncatum HOM05D007592 ORTHO05D004645 7.0e-07 58.5 73 50.7
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.1e-07 58.2 136 32.4
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 1.2e-06 57.8 71 38.0
Atru.chr4.832 Acer truncatum HOM05D007592 ORTHO05D004645 1.5e-06 57.4 115 35.7
Atru.chr8.363 Acer truncatum HOM05D007592 ORTHO05D004645 4.5e-06 55.8 139 31.7
SGA_v2.0_scaffold211G42135 Striga asiatica HOM05D007592 ORTHO05D004645 4.5e-06 55.8 89 40.4
BolC9t57561H Brassica oleracea HOM05D033289 ORTHO05D033072 5.9e-06 55.5 83 42.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 5.9e-06 55.5 158 31.6


User provided reference genes

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