Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.7e-135 483.8 274 100.0
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 4.2e-44 182.6 282 46.1
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 6.0e-43 178.7 310 42.9
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 6.7e-42 175.3 284 43.7
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.5e-41 174.1 282 42.9
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.3e-40 171.0 294 42.5
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 2.0e-38 163.7 276 44.6
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 2.9e-37 159.8 276 42.4
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 8.4e-37 158.3 279 39.4
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.1e-35 153.7 280 39.3
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 3.0e-34 149.8 153 54.9
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 5.1e-34 149.1 283 41.3
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.5e-33 146.7 291 38.1
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 7.4e-33 145.2 164 53.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 4.8e-32 142.5 280 41.4
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 6.2e-32 142.1 221 44.8
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.1e-31 141.4 282 38.3
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.4e-31 141.0 309 38.2
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.4e-31 141.0 312 37.2
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.5e-30 137.5 274 38.3
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.5e-30 137.5 302 35.8
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 5.8e-30 135.6 148 54.7
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-29 134.4 294 36.1
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.9e-29 133.3 297 36.7
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.9e-29 132.5 299 38.8
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.4e-28 131.0 326 35.3
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 9.3e-28 128.3 260 36.9
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.7e-27 126.7 305 36.4
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 7.9e-27 125.2 305 36.1
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.0e-26 124.8 138 53.6
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.8e-26 124.0 298 36.9
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.8e-26 124.0 275 36.0
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.3e-26 123.6 310 37.4
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 6.7e-26 122.1 276 38.4
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.1e-25 121.3 250 40.0
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 2.5e-25 120.2 173 46.2
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.3e-25 119.4 311 35.7
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 4.3e-25 119.4 287 35.5
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.3e-24 117.9 302 35.8
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 2.2e-24 117.1 312 35.6
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.8e-24 116.7 266 37.6
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 8.2e-24 115.2 168 44.6
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 8.2e-24 115.2 168 45.2
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.4e-23 114.4 180 45.6
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 2.4e-23 113.6 300 34.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 6.9e-23 112.1 270 35.6
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.0e-22 110.5 303 34.7
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 2.0e-22 110.5 284 34.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.6e-22 110.2 280 36.8
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 4.5e-22 109.4 285 33.3
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 4.5e-22 109.4 309 32.7
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 5.9e-22 109.0 300 32.3
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 5.9e-22 109.0 275 33.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 7.6e-22 108.6 299 32.4
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 7.6e-22 108.6 282 35.5
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.0e-21 108.2 294 36.4
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.0e-21 108.2 284 34.9
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.7e-21 107.5 131 48.9
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.2e-21 107.1 297 34.0
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 3.8e-21 106.3 108 57.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.1e-20 104.8 287 35.5
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.1e-20 104.8 283 36.0
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.1e-20 104.8 306 33.0
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.4e-20 104.4 272 34.9
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.5e-20 103.6 272 34.9
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.5e-20 103.6 274 34.3
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 5.5e-20 102.4 300 33.3
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.2e-20 102.1 280 34.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 7.2e-20 102.1 271 33.9
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 9.3e-20 101.7 272 34.2
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.6e-19 100.9 281 33.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.1e-19 100.5 284 36.3
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.1e-19 100.5 287 32.8
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.7e-19 100.1 272 34.2
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.7e-19 100.1 280 33.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.6e-19 99.4 287 33.4
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 6.1e-19 99.0 297 33.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 7.9e-19 98.6 272 35.7
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 7.9e-19 98.6 295 34.2
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 7.9e-19 98.6 284 32.7
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.4e-18 97.8 290 31.7
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 1.8e-18 97.4 279 31.5
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.9e-18 96.3 270 36.7
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 5.1e-18 95.9 290 32.4
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 8.8e-18 95.1 331 29.0
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 8.8e-18 95.1 299 34.1
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.1e-17 94.7 274 32.8
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.5e-17 94.4 280 33.2
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.5e-17 94.4 278 32.7
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.9e-17 94.0 303 30.0
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.3e-17 93.2 292 31.5
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 4.3e-17 92.8 264 33.0
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.3e-17 92.8 292 31.8
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 4.3e-17 92.8 292 30.5
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 9.7e-17 91.7 264 33.3
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 9.7e-17 91.7 291 31.3
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.3e-16 91.3 326 31.3
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 2.2e-16 90.5 135 45.2
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 2.8e-16 90.1 272 29.0
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 3.7e-16 89.7 280 30.0
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.8e-16 89.4 134 45.5
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.8e-16 89.4 134 45.5
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 6.3e-16 89.0 281 33.5
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 6.3e-16 89.0 278 32.0
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 8.2e-16 88.6 274 29.9
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.8e-15 87.4 300 31.7
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.8e-15 87.4 277 33.9
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.4e-15 87.0 283 30.4
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.1e-15 86.7 265 34.7
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 5.3e-15 85.9 259 32.8
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.3e-15 85.9 278 31.3
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.3e-15 85.9 278 29.5
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.3e-15 85.9 296 29.4
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 5.3e-15 85.9 143 44.1
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 6.9e-15 85.5 279 33.7
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 6.9e-15 85.5 287 29.3
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 9.1e-15 85.1 290 35.5
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 9.1e-15 85.1 278 29.5
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 9.1e-15 85.1 282 32.6
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 9.1e-15 85.1 161 41.0
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 9.1e-15 85.1 298 32.2
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-14 84.3 279 29.7
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 3.4e-14 83.2 300 30.0
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 7.7e-14 82.0 274 29.9
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 7.7e-14 82.0 294 28.9
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.0e-13 81.6 284 32.0
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.0e-13 81.6 274 28.5
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.3e-13 81.3 277 30.0
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.3e-13 81.3 272 29.0
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-13 81.3 265 30.9
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.7e-13 80.9 288 28.1
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-13 80.9 272 28.7
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.7e-13 80.9 272 28.7
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 1.7e-13 80.9 305 30.8
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.9e-13 80.1 323 29.7
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.9e-13 80.1 276 29.3
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.8e-13 79.7 296 30.4
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 5.0e-13 79.3 281 30.2
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 6.5e-13 79.0 348 28.7
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 6.5e-13 79.0 282 29.4
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 8.5e-13 78.6 269 29.7
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.1e-12 78.2 359 28.4
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.9e-12 77.4 287 29.3
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.5e-12 77.0 274 29.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.5e-12 75.9 285 28.4
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.5e-12 75.9 285 28.4
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 7.2e-12 75.5 275 28.4
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 9.4e-12 75.1 274 31.4
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.2e-11 74.7 295 30.5
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.2e-11 74.7 294 30.3
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.2e-11 74.7 264 28.0
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.6e-11 74.3 292 29.8
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.1e-11 73.9 290 30.7
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 3.6e-11 73.2 299 29.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 4.7e-11 72.8 159 37.7
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 7.9e-11 72.0 285 29.8
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.4e-10 71.2 290 31.7
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.8e-10 70.9 293 26.6
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 3.0e-10 70.1 291 29.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.1e-09 68.2 291 28.5
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 7.4e-09 65.5 145 34.5
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 7.4e-09 65.5 282 27.0
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.3e-08 64.7 295 25.8
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 4.8e-08 62.8 165 32.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 6.3e-08 62.4 132 35.6
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.3e-08 62.4 291 27.1
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 8.2e-08 62.0 278 28.8
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.8e-07 60.8 278 25.9
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.4e-07 60.5 280 28.2
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 6.9e-07 58.9 231 28.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 3.4e-06 56.6 294 24.5
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 5.9e-06 55.8 170 30.0


User provided reference genes

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