Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 7.5e-43 176.8 90 100.0
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 1.9e-33 145.6 88 81.8
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 4.1e-33 144.4 90 80.0
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 1.6e-32 142.5 86 80.2
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 2.7e-32 141.7 88 77.3
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 3.5e-32 141.4 88 79.5
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 3.5e-32 141.4 88 78.4
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 3.5e-32 141.4 85 80.0
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 7.8e-32 140.2 88 77.3
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 1.0e-31 139.8 88 77.3
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.3e-31 139.4 89 78.7
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 1.3e-31 139.4 88 78.4
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 1.3e-31 139.4 88 77.3
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 2.3e-31 138.7 88 76.1
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 2.3e-31 138.7 85 77.6
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 3.9e-31 137.9 88 75.0
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 5.1e-31 137.5 88 76.1
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 5.1e-31 137.5 88 78.4
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 8.6e-31 136.7 87 78.2
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 1.1e-30 136.3 84 77.4
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 1.5e-30 136.0 80 81.2
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 1.5e-30 136.0 88 77.3
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.9e-30 135.6 80 82.5
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 1.9e-30 135.6 80 82.5
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 1.9e-30 135.6 87 75.9
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 2.5e-30 135.2 85 77.6
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 4.3e-30 134.4 88 77.3
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 4.3e-30 134.4 83 78.3
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 4.3e-30 134.4 88 75.0
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 4.3e-30 134.4 80 82.5
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 7.3e-30 133.7 83 77.1
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 1.2e-29 132.9 87 73.6
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 1.2e-29 132.9 88 73.9
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 1.2e-29 132.9 88 73.9
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 1.6e-29 132.5 83 75.9
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 1.6e-29 132.5 88 69.3
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 1.6e-29 132.5 88 71.6
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 2.8e-29 131.7 79 79.7
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.8e-29 131.7 84 76.2
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 3.6e-29 131.3 89 73.0
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 3.6e-29 131.3 84 76.2
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 3.6e-29 131.3 84 76.2
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 3.6e-29 131.3 89 73.0
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 3.6e-29 131.3 86 73.3
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 4.7e-29 131.0 85 77.6
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 4.7e-29 131.0 87 72.4
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 4.7e-29 131.0 88 73.9
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 6.2e-29 130.6 89 73.0
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 8.1e-29 130.2 89 71.9
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 8.1e-29 130.2 89 71.9
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 1.1e-28 129.8 89 71.9
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 1.1e-28 129.8 88 73.9
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 2.3e-28 128.6 89 70.8
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 2.3e-28 128.6 88 69.3
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 2.3e-28 128.6 89 70.8
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 2.3e-28 128.6 89 70.8
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 2.3e-28 128.6 89 73.0
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 3.1e-28 128.3 89 70.8
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 3.1e-28 128.3 91 73.6
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 4.0e-28 127.9 88 71.6
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 4.0e-28 127.9 85 76.5
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 6.8e-28 127.1 80 77.5
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 6.8e-28 127.1 85 76.5
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 8.9e-28 126.7 85 76.5
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 8.9e-28 126.7 85 76.5
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 2.0e-27 125.6 88 68.2
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 4.9e-26 120.9 73 80.8
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 4.9e-26 120.9 82 73.2
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 6.4e-26 120.6 86 73.3
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.4e-25 118.6 73 78.1
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 5.4e-25 117.5 88 67.0
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 7.1e-25 117.1 83 68.7
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 7.1e-25 117.1 86 64.0
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 2.1e-24 115.5 88 67.0
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 4.6e-24 114.4 72 76.4
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 1.0e-23 113.2 84 64.3
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 1.0e-23 113.2 89 65.2
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 1.7e-23 112.5 86 65.1
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 3.0e-23 111.7 71 73.2
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 3.0e-23 111.7 88 62.5
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 3.9e-23 111.3 89 62.9
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 5.1e-23 110.9 72 73.6
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 5.6e-22 107.5 71 71.8
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 1.6e-21 105.9 86 62.8
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 1.6e-21 105.9 81 69.1
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 3.6e-21 104.8 81 65.4
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 6.2e-21 104.0 82 65.9
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 1.1e-20 103.2 68 76.5
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 1.4e-20 102.8 68 75.0
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 4.0e-20 101.3 75 72.0
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 6.8e-20 100.5 74 70.3
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 8.9e-20 100.1 76 69.7
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 4.4e-19 97.8 60 78.3
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 9.9e-19 96.7 63 73.0
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 1.7e-18 95.9 61 75.4
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 3.8e-18 94.7 77 64.9
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 6.4e-18 94.0 82 61.0
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.1e-17 93.2 55 80.0
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 7.1e-17 90.5 80 58.8
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 6.6e-15 84.0 63 73.0
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 1.6e-13 79.3 52 67.3
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 2.8e-13 78.6 54 66.7
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 1.8e-12 75.9 87 48.3
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 9.0e-12 73.6 79 49.4
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 2.6e-11 72.0 57 57.9
Actinidia22956 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.9e-09 65.9 89 50.6
Zm00001eb428230 Zea mays HOM05D007446 ORTHO05D009376 7.1e-09 63.9 57 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 2.1e-08 62.4 61 44.3
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 1.3e-07 59.7 37 75.7


User provided reference genes

Program Settings