Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 8.1e-54 213.4 101 100.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.7e-43 179.1 101 84.2
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.1e-41 172.2 101 84.2
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.1e-41 172.2 101 83.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.1e-41 172.2 101 83.2
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 2.7e-41 171.8 100 81.0
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.0e-41 170.6 101 83.2
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 8.7e-40 166.8 101 81.2
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.5e-39 166.0 99 81.8
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.9e-39 165.6 101 82.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 9.6e-39 163.3 100 79.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.6e-39 163.3 101 81.2
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 9.6e-39 163.3 101 81.2
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 6.3e-38 160.6 101 77.2
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 8.2e-38 160.2 98 76.5
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.1e-37 159.8 100 76.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.1e-37 159.8 101 79.2
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.1e-37 159.8 101 73.3
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.8e-37 159.1 99 76.8
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.8e-37 159.1 101 74.3
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.4e-37 158.7 102 74.5
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.4e-37 158.7 99 78.8
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.1e-37 158.3 101 79.2
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 3.1e-37 158.3 102 76.5
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 4.1e-37 157.9 99 74.7
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.3e-37 157.5 101 76.2
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.5e-36 156.0 99 76.8
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.5e-36 156.0 99 78.8
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 2.0e-36 155.6 99 75.8
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.0e-36 155.6 101 75.2
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 2.0e-36 155.6 88 84.1
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.0e-36 155.6 99 77.8
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.4e-36 154.8 100 75.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 7.6e-36 153.7 101 77.2
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.0e-35 153.3 99 74.7
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.0e-35 153.3 100 77.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.0e-35 153.3 101 74.3
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.3e-35 152.9 100 77.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.3e-35 152.9 100 77.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.3e-35 152.9 101 74.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.3e-35 152.9 101 73.3
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.7e-35 152.5 94 76.6
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.7e-35 152.5 98 73.5
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.2e-35 152.1 100 77.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 2.2e-35 152.1 102 74.5
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.2e-35 152.1 100 72.0
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.2e-35 152.1 100 80.0
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.9e-35 151.8 99 74.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.9e-35 151.8 98 75.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.9e-35 151.8 100 72.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.0e-35 151.0 101 75.2
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.0e-35 151.0 100 76.0
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.0e-35 151.0 100 76.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.4e-34 149.4 101 76.2
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.9e-34 149.1 101 69.3
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.2e-33 146.4 102 71.6
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.6e-33 146.0 98 71.4
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 2.7e-33 145.2 86 80.2
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.5e-33 144.8 87 79.3
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.6e-33 144.4 101 70.3
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 6.1e-33 144.1 98 71.4
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.8e-32 142.5 103 70.9
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.8e-32 142.5 88 80.7
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 3.9e-32 141.4 96 72.9
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.5e-31 139.4 97 68.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 3.3e-31 138.3 95 70.5
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.3e-31 138.3 100 69.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 5.7e-31 137.5 101 73.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 5.7e-31 137.5 99 67.7
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.4e-31 137.1 100 70.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.4e-31 137.1 100 70.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 7.4e-31 137.1 98 69.4
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 9.7e-31 136.7 95 69.5
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.6e-30 136.0 96 66.7
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.2e-30 135.6 101 67.3
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.2e-30 135.6 95 69.5
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 6.3e-30 134.0 95 68.4
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 6.3e-30 134.0 99 68.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.1e-29 133.3 91 70.3
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.1e-29 133.3 95 69.5
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.1e-29 133.3 91 70.3
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.1e-29 133.3 103 68.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.8e-29 132.5 87 71.3
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.4e-29 132.1 95 67.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.4e-29 132.1 96 65.6
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 3.1e-29 131.7 102 64.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 3.1e-29 131.7 95 67.4
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 5.3e-29 131.0 101 64.4
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 5.3e-29 131.0 86 69.8
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 6.9e-29 130.6 87 73.6
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 9.0e-29 130.2 88 72.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 9.0e-29 130.2 101 67.3
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 9.0e-29 130.2 112 60.7
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.2e-28 129.8 94 66.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.2e-28 129.8 103 66.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.6e-28 128.6 101 69.3
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.5e-28 127.9 104 65.4
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 5.9e-28 127.5 100 61.0
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 5.9e-28 127.5 100 61.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 7.7e-28 127.1 101 65.3
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.3e-27 126.3 86 72.1
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.2e-27 125.6 99 63.6
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.9e-27 125.2 100 63.0
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 6.5e-27 124.0 102 63.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 8.5e-27 123.6 104 63.5
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.1e-26 123.2 100 62.0
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.1e-26 123.2 88 70.5
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.4e-26 122.9 100 67.0
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.5e-26 122.1 76 73.7
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 4.2e-26 121.3 100 61.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 5.5e-26 120.9 89 67.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 7.2e-26 120.6 95 60.0
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 7.2e-26 120.6 107 63.6
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 9.4e-26 120.2 86 68.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.2e-25 119.8 127 53.5
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.6e-25 119.4 101 60.4
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.7e-25 118.6 95 58.9
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 3.6e-25 118.2 88 67.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.6e-25 117.9 88 70.5
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 4.6e-25 117.9 99 60.6
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.0e-24 115.2 101 60.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.0e-24 115.2 101 60.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.1e-24 114.4 83 62.7
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 8.8e-24 113.6 101 61.4
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.3e-22 109.8 66 72.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 1.7e-22 109.4 78 65.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 8.2e-22 107.1 91 61.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 6.9e-21 104.0 73 72.6
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.7e-19 99.4 50 82.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.9e-18 95.9 88 55.7
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 6.1e-17 90.9 99 52.5
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.9e-17 90.5 72 62.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.3e-16 89.0 72 65.3
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.9e-16 88.2 68 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 5.1e-16 87.8 93 51.6
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.8e-16 87.0 72 66.7
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.3e-14 83.2 98 51.0
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.7e-14 82.8 76 59.2
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.8e-14 81.3 75 61.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-13 79.7 110 46.4
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.4e-13 79.0 68 61.8
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 5.9e-12 74.3 66 53.0
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 5.0e-11 71.2 86 41.9
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.1e-10 70.1 81 46.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.5e-10 68.9 35 80.0
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 7.2e-10 67.4 77 44.2
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.6e-09 66.2 61 50.8
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.1e-09 64.3 88 44.3
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 6.1e-09 64.3 42 64.3
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 2.6e-07 58.9 52 59.6
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 2.6e-07 58.9 52 59.6
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 4.8e-06 54.7 57 50.9


User provided reference genes

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