Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 2.2e-57 225.3 108 100.0
Ciclev10027457m.g Citrus clementina HOM05D008232 ORTHO05D010390 4.8e-28 127.9 64 95.3
FvH4_6g27930 Fragaria vesca HOM05D008232 ORTHO05D010390 4.2e-24 114.8 103 55.3
QL04p062033 Quercus lobata HOM05D008232 ORTHO05D010390 5.5e-24 114.4 103 58.3
FAN02G3893 Fragaria x ananassa HOM05D008232 ORTHO05D010390 7.2e-24 114.0 103 55.3
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 1.2e-23 113.2 101 59.4
FAN14G2943 Fragaria x ananassa HOM05D008232 ORTHO05D010390 3.6e-23 111.7 103 54.4
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 1.4e-22 109.8 105 56.2
Potri.010G248600 Populus trichocarpa HOM05D008232 ORTHO05D010390 1.4e-22 109.8 107 57.9
FAN05G2300 Fragaria x ananassa HOM05D008232 ORTHO05D010390 1.8e-22 109.4 103 52.4
MD09G1231600 Malus domestica HOM05D008232 ORTHO05D010390 1.7e-20 102.8 103 51.5
FAN09G3435 Fragaria x ananassa HOM05D008232 ORTHO05D010390 3.7e-20 101.7 100 52.0
Prupe.3G107800 Prunus persica HOM05D008232 ORTHO05D010390 8.2e-20 100.5 108 50.9
THA.LOC104813941 Tarenaya hassleriana HOM05D008232 ORTHO05D010390 1.5e-18 96.3 107 51.4
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 1.5e-18 96.3 103 50.5
Thhalv10019346m.g Eutrema salsugineum HOM05D008232 ORTHO05D010390 3.4e-18 95.1 102 51.0
RcHm_v2.0_Chr2g0131491 Rosa chinensis HOM05D008232 ORTHO05D010390 3.4e-18 95.1 86 52.3
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 4.5e-18 94.7 103 45.6
CARHR066090 Cardamine hirsuta HOM05D008232 ORTHO05D010390 7.7e-18 94.0 102 52.0
Sp5g28080 Schrenkiella parvula HOM05D008232 ORTHO05D010390 7.7e-18 94.0 102 50.0
Carub.0002s1989 Capsella rubella HOM05D008232 ORTHO05D010390 1.0e-17 93.6 102 49.0
AL2G32870 Arabidopsis lyrata HOM05D008232 ORTHO05D010390 2.2e-17 92.4 102 47.1
Eucgr.J03142 Eucalyptus grandis HOM05D008232 ORTHO05D010390 2.9e-17 92.0 107 48.6
AT1G73120 Arabidopsis thaliana HOM05D008232 ORTHO05D010390 3.8e-17 91.7 102 47.1
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 3.8e-17 91.7 104 51.9
Oeu036452.1 Olea europaea HOM05D008232 ORTHO05D010390 3.8e-17 91.7 103 47.6
Migut.I00645 Erythranthe guttata HOM05D008232 ORTHO05D010390 5.0e-17 91.3 100 52.0
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 5.0e-17 91.3 104 51.9
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 1.1e-16 90.1 103 48.5
A07p39100 Brassica napus HOM05D008232 ORTHO05D010390 1.9e-16 89.4 105 47.6
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 4.2e-16 88.2 104 50.0
BolC6t39770H Brassica oleracea HOM05D008232 ORTHO05D010390 9.4e-16 87.0 105 46.7
Peaxi162Scf00207g00211 Petunia axillaris HOM05D005461 ORTHO05D007157 9.4e-16 87.0 98 46.9
BraA07t31461Z Brassica rapa HOM05D008232 ORTHO05D010390 1.2e-15 86.7 105 46.7
Dinv23254 Davidia involucrata HOM05D008232 ORTHO05D010390 1.2e-15 86.7 103 45.6
Aa31LG4G3390 Aethionema arabicum HOM05D008232 ORTHO05D010390 1.6e-15 86.3 103 48.5
C02p30580 Brassica napus HOM05D008232 ORTHO05D010390 1.6e-15 86.3 104 47.1
C06p47310 Brassica napus HOM05D008232 ORTHO05D010390 1.6e-15 86.3 105 46.7
Solyc06g068660.3 Solanum lycopersicum HOM05D008232 ORTHO05D010390 1.6e-15 86.3 103 43.7
Sopen06g025940 Solanum pennellii HOM05D008232 ORTHO05D010390 1.6e-15 86.3 103 43.7
MELO3C016243.2 Cucumis melo HOM05D008232 ORTHO05D010390 3.6e-15 85.1 111 44.1
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 3.6e-15 85.1 110 45.5
CsaV3_4G007020 Cucumis sativus L. HOM05D008232 ORTHO05D010390 4.7e-15 84.7 111 44.1
Sed0014962 Sechium edule HOM05D008232 ORTHO05D010390 8.0e-15 84.0 110 45.5
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.4e-14 83.2 103 42.7
A02p18450 Brassica napus HOM05D008232 ORTHO05D010390 1.8e-14 82.8 108 46.3
BraA02t06884Z Brassica rapa HOM05D008232 ORTHO05D010390 3.0e-14 82.0 108 46.3
SalBow7G0137 Salvia bowleyana HOM05D008232 ORTHO05D010390 3.9e-14 81.6 89 47.2
Sc10g0006420 Simmondsia chinensis HOM05D008232 ORTHO05D010390 5.2e-14 81.3 100 48.0
TWI31G1109 Tripterygium wilfordii HOM05D008232 ORTHO05D010390 8.8e-14 80.5 107 43.0
Cfa023521 Carpinus fangiana HOM05D008232 ORTHO05D010390 1.5e-13 79.7 82 53.7
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 2.0e-13 79.3 90 44.4
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 2.0e-13 79.3 111 37.8
Sc10g0006360 Simmondsia chinensis HOM05D008232 ORTHO05D010390 3.3e-13 78.6 99 46.5
Hund22378 Selenicereus undatus HOM05D008232 ORTHO05D010390 9.7e-13 77.0 107 42.1
Lsat_1_v5_gn_4_85220 Lactuca sativa HOM05D008232 ORTHO05D010390 1.7e-12 76.3 106 39.6
CANSAT64G1479 Cannabis sativa HOM05D008232 ORTHO05D010390 2.2e-12 75.9 105 44.8
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 2.8e-12 75.5 106 38.7
Nitab4.5_0004890g0010 Nicotiana tabacum HOM05D008232 ORTHO05D010390 6.3e-12 74.3 92 45.7
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 1.1e-11 73.6 106 41.5
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 3.1e-11 72.0 83 48.2
ClCG07G011230 Citrullus lanatus HOM05D008232 ORTHO05D010390 7.7e-10 67.4 94 43.6
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.7e-09 66.2 103 35.9
Cc04_g05510 Coffea canephora HOM05D000169 ORTHO05D001214 2.9e-09 65.5 92 45.7
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 5.5e-08 61.2 40 62.5
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.6e-07 59.7 45 55.6
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 2.1e-07 59.3 43 62.8
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.7e-07 58.9 48 50.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 4.7e-07 58.2 87 34.5
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 4.7e-07 58.2 70 38.6
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.4e-06 56.6 87 34.5
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.4e-06 56.6 48 50.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.4e-06 56.6 40 55.0
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.8e-06 56.2 47 48.9
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.8e-06 56.2 48 47.9
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.3e-06 55.8 77 36.4
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 2.3e-06 55.8 72 44.4
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 3.0e-06 55.5 47 48.9
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 4.0e-06 55.1 48 47.9
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 4.0e-06 55.1 42 52.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 5.2e-06 54.7 34 64.7
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 5.2e-06 54.7 50 50.0
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 6.7e-06 54.3 40 47.5
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 6.7e-06 54.3 47 48.9
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 8.8e-06 53.9 58 41.4
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 8.8e-06 53.9 40 50.0
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 8.8e-06 53.9 83 36.1


User provided reference genes

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