Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.7e-67 259.2 136 100.0
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.7e-30 136.3 83 88.0
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.5e-23 113.2 99 69.7
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.1e-16 90.5 77 61.0
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.1e-16 90.5 77 61.0
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.2e-15 87.0 84 59.5
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.0e-15 86.3 77 58.4
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 7.7e-15 84.3 83 59.0
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.7e-14 83.2 77 59.7
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.2e-14 82.8 77 62.3
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.2e-14 82.8 89 51.7
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.2e-14 82.8 86 54.7
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 2.9e-14 82.4 83 55.4
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.0e-14 81.6 77 61.0
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 6.5e-14 81.3 83 55.4
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 6.5e-14 81.3 83 55.4
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 1.4e-13 80.1 72 56.9
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 2.5e-13 79.3 91 51.6
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 4.2e-13 78.6 85 55.3
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.2e-13 78.6 83 54.2
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.2e-13 78.6 83 54.2
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.2e-13 78.6 87 54.0
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 5.5e-13 78.2 77 57.1
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.5e-13 78.2 77 59.7
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.2e-13 77.8 83 54.2
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 7.2e-13 77.8 87 52.9
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 7.2e-13 77.8 71 57.7
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 7.2e-13 77.8 77 59.7
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.2e-12 77.0 90 51.1
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.6e-12 76.6 76 57.9
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.6e-12 76.6 83 54.2
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.6e-12 76.6 84 52.4
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.1e-12 76.3 83 51.8
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.6e-12 75.5 77 58.4
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 4.7e-12 75.1 77 54.5
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 4.7e-12 75.1 55 65.5
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 4.7e-12 75.1 80 56.2
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 6.1e-12 74.7 81 49.4
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 7.9e-12 74.3 82 54.9
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-11 73.9 83 53.0
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.0e-11 73.9 61 59.0
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.0e-11 73.9 89 49.4
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.4e-11 73.6 83 55.4
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.8e-11 73.2 77 49.4
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.8e-11 73.2 78 55.1
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.8e-11 73.2 79 59.5
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 2.3e-11 72.8 92 45.7
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.3e-11 72.8 66 62.1
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.0e-11 72.4 91 50.5
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 3.0e-11 72.4 77 54.5
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 3.9e-11 72.0 91 54.9
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 5.1e-11 71.6 45 73.3
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 5.1e-11 71.6 80 51.2
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.1e-10 70.5 84 48.8
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-10 70.5 77 55.8
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.5e-10 70.1 78 55.1
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.5e-10 70.1 98 45.9
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.5e-10 70.1 92 52.2
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.0e-10 69.7 106 40.6
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 2.6e-10 69.3 77 50.6
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 2.6e-10 69.3 52 57.7
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 2.6e-10 69.3 52 57.7
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 3.3e-10 68.9 68 58.8
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 3.3e-10 68.9 70 57.1
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 4.4e-10 68.6 78 48.7
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 5.7e-10 68.2 70 58.6
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 5.7e-10 68.2 52 57.7
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 5.7e-10 68.2 85 50.6
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 7.4e-10 67.8 84 47.6
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 7.4e-10 67.8 88 46.6
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.7e-10 67.4 89 47.2
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.3e-09 67.0 89 47.2
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.3e-09 67.0 89 47.2
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.3e-09 67.0 77 50.6
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.3e-09 67.0 46 67.4
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.7e-09 66.6 98 48.0
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.7e-09 66.6 94 42.6
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.7e-09 66.6 95 45.3
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.7e-09 66.6 52 55.8
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 2.2e-09 66.2 94 46.8
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 2.2e-09 66.2 88 50.0
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 2.2e-09 66.2 95 46.3
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 2.2e-09 66.2 41 75.6
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 2.2e-09 66.2 58 58.6
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 2.8e-09 65.9 68 57.4
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 2.8e-09 65.9 75 56.0
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 3.7e-09 65.5 86 46.5
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 3.7e-09 65.5 84 46.4
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 4.8e-09 65.1 45 68.9
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 4.8e-09 65.1 92 47.8
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 6.3e-09 64.7 78 51.3
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 6.3e-09 64.7 78 51.3
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 6.3e-09 64.7 78 51.3
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 6.3e-09 64.7 90 50.0
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 6.3e-09 64.7 41 75.6
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 8.2e-09 64.3 55 63.6
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 1.1e-08 63.9 75 53.3
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.1e-08 63.9 76 53.9
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 1.1e-08 63.9 75 53.3
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 1.1e-08 63.9 75 53.3
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 1.1e-08 63.9 73 46.6
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.1e-08 63.9 77 49.4
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 1.8e-08 63.2 75 54.7
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 2.4e-08 62.8 55 60.0
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.1e-08 62.4 78 46.2
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 5.3e-08 61.6 49 61.2
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 5.3e-08 61.6 69 46.4
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 7.0e-08 61.2 41 70.7
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.2e-07 60.5 49 63.3
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.2e-07 60.5 49 63.3
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 1.2e-07 60.5 38 71.1
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 2.0e-07 59.7 45 66.7
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.0e-07 59.7 79 48.1
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 2.0e-07 59.7 63 50.8
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.4e-07 58.9 67 52.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.5e-07 58.5 53 56.6
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 4.5e-07 58.5 63 54.0
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 5.9e-07 58.2 85 44.7
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.9e-07 58.2 66 51.5
AL7G33090 Arabidopsis lyrata HOM05D012071 ORTHO05D013970 3.8e-06 55.5 90 45.6
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 3.8e-06 55.5 81 48.1
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 8.5e-06 54.3 40 65.0


User provided reference genes

Program Settings