Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 2.8e-82 308.5 153 100.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 3.7e-74 281.6 153 88.9
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.1e-73 278.5 153 88.2
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 6.9e-73 277.3 153 87.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 7.7e-72 273.9 153 85.6
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 7.7e-72 273.9 153 87.6
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.0e-71 273.5 152 85.5
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.7e-71 272.7 153 87.6
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.9e-71 271.9 153 84.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 2.9e-71 271.9 153 85.0
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 5.0e-71 271.2 153 86.3
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.1e-70 270.0 153 86.9
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.4e-70 269.6 150 87.3
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-70 269.2 151 84.1
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.9e-70 269.2 153 85.6
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-70 269.2 148 87.8
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.5e-70 268.9 150 84.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 82.4
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 83.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 5.5e-70 267.7 153 83.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-69 266.5 153 83.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-69 266.2 150 84.7
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 81.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-69 266.2 151 84.8
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.7e-69 265.4 151 83.4
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 3.6e-69 265.0 153 81.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.6e-69 265.0 151 84.1
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 4.7e-69 264.6 153 82.4
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 4.7e-69 264.6 153 83.0
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 4.7e-69 264.6 150 82.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 7.9e-69 263.8 150 84.0
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 7.9e-69 263.8 145 88.3
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 83.0
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 82.4
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 83.7
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.8e-68 262.7 151 82.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 2.3e-68 262.3 152 84.2
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 3.0e-68 261.9 153 81.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.0e-68 261.9 150 82.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.0e-68 261.9 153 82.4
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 3.9e-68 261.5 151 82.8
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 3.9e-68 261.5 153 81.7
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.9e-68 261.5 150 82.0
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.1e-68 261.2 151 82.8
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 6.7e-68 260.8 150 82.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 8.8e-68 260.4 152 83.6
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 8.8e-68 260.4 145 82.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 82.4
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.7
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 81.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.1
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 80.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 78.4
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 81.0
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.5e-67 259.6 153 79.7
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 3.3e-67 258.5 151 82.1
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 83.0
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.3e-67 258.5 151 80.8
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 79.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 79.1
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 78.4
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 5.7e-67 257.7 153 82.4
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 79.5
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 79.5
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 82.1
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 80.8
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 80.4
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.7e-67 256.9 155 80.6
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.3e-66 256.5 150 82.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 78.4
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.2e-66 255.8 151 81.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 79.1
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 81.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.8e-66 255.4 151 79.5
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 81.0
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 78.8
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 77.8
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 6.3e-66 254.2 151 81.5
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 8.2e-66 253.8 151 78.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-65 253.1 154 79.2
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 79.7
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 3.1e-65 251.9 153 79.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 4.1e-65 251.5 155 77.4
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 4.1e-65 251.5 151 77.5
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 79.1
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 3.5e-64 248.4 150 80.0
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 79.1
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 7.7e-64 247.3 152 76.3
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.0e-63 246.9 150 80.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 75.8
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 2.2e-63 245.7 150 77.3
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.9e-63 245.4 151 78.1
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 5.0e-63 244.6 149 79.9
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 5.0e-63 244.6 153 74.5
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 73.2
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 75.2
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.5e-62 243.0 148 76.4
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 73.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 5.5e-62 241.1 150 74.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 9.4e-62 240.4 151 77.5
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.2e-61 240.0 153 73.2
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.6e-61 239.6 148 81.1
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.1e-61 239.2 153 75.2
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 6.1e-61 237.7 153 71.9
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 72.5
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 2.3e-60 235.7 150 73.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 2.3e-60 235.7 152 71.1
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 3.0e-60 235.3 150 72.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 3.0e-60 235.3 150 72.0
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 5.2e-60 234.6 151 71.5
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 6.7e-60 234.2 150 72.0
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.1e-59 233.4 153 71.2
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.1e-59 233.4 153 69.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.5e-59 233.0 151 70.9
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 72.7
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 6.3e-58 227.6 153 70.6
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.2e-58 227.3 150 75.3
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 3.1e-57 225.3 155 70.3
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.1e-57 225.3 151 70.2
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.1e-57 223.8 155 69.0
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.2e-56 223.4 168 64.3
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.2e-54 215.3 143 73.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 2.1e-53 212.6 153 66.7
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 2.3e-52 209.1 153 62.1
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 6.8e-52 207.6 122 82.8
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 5.7e-51 204.5 119 81.5
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.8e-51 203.8 153 67.3
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.2e-50 202.6 120 80.8
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.4e-49 199.9 145 60.0
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 8.5e-47 190.7 128 70.3
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.1e-46 190.3 111 76.6
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.6e-45 185.3 111 73.9
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.4e-44 183.3 153 54.2
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 3.1e-41 172.2 181 51.9
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.5e-35 153.3 149 49.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.4e-35 152.1 95 78.9
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 5.4e-33 144.8 75 88.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.6e-32 143.3 78 87.2
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-30 137.1 100 70.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 4.3e-30 135.2 145 46.2
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 5.6e-30 134.8 121 57.9
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 2.8e-29 132.5 75 80.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.3e-26 123.6 75 80.0
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-26 123.2 67 83.6
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.7e-26 122.1 78 78.2
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 6.4e-26 121.3 75 76.0
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.4e-25 120.2 75 80.0
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-25 119.4 58 87.9
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 5.4e-25 118.2 75 76.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 4.7e-21 105.1 145 38.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 6.8e-12 74.7 48 79.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.5e-06 57.0 55 58.2


User provided reference genes

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