Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 3.9e-105 384.8 194 100.0
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 2.5e-83 312.4 191 79.1
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 7.2e-83 310.8 192 78.6
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 4.7e-82 308.1 192 76.6
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 1.0e-81 307.0 192 75.5
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 1.4e-81 306.6 190 76.8
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.4e-81 306.6 192 78.1
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 1.8e-81 306.2 189 77.8
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 5.1e-81 304.7 192 76.6
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 5.7e-80 301.2 192 78.6
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 9.7e-80 300.4 192 77.1
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 1.3e-79 300.1 192 74.0
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 1.7e-79 299.7 189 75.7
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.7e-79 299.7 194 73.7
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 2.2e-79 299.3 192 76.0
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 2.2e-79 299.3 192 73.4
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 2.2e-79 299.3 194 74.2
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 3.7e-79 298.5 188 75.5
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.8e-78 296.2 188 77.1
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 1.8e-78 296.2 194 73.7
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 5.3e-78 294.7 192 75.0
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 9.1e-78 293.9 192 73.4
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 2.0e-77 292.7 191 74.3
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 3.5e-77 292.0 193 73.6
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 4.5e-77 291.6 192 74.5
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 5.9e-77 291.2 191 75.4
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 1.0e-76 290.4 192 76.0
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 1.0e-76 290.4 192 74.5
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 1.0e-76 290.4 192 71.4
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.3e-76 290.0 183 77.6
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 1.7e-76 289.7 212 68.9
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 2.9e-76 288.9 189 73.5
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.9e-76 288.9 190 73.2
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 3.8e-76 288.5 190 72.1
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 5.0e-76 288.1 192 70.8
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 6.5e-76 287.7 185 76.8
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 8.5e-76 287.3 185 75.7
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 1.9e-75 286.2 190 73.2
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 1.9e-75 286.2 192 75.5
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 5.5e-75 284.6 189 73.0
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 9.4e-75 283.9 184 72.8
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.2e-74 283.5 192 72.4
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.2e-74 283.5 190 70.5
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 2.7e-74 282.3 190 70.5
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 2.7e-74 282.3 184 74.5
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 1.0e-73 280.4 192 70.8
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 1.4e-73 280.0 189 71.4
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 1.4e-73 280.0 234 61.1
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 1.8e-73 279.6 192 70.3
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 2.3e-73 279.3 184 71.7
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 3.0e-73 278.9 192 69.8
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 4.0e-73 278.5 190 68.9
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 1.5e-72 276.6 186 70.4
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 1.5e-72 276.6 192 66.7
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.6e-72 275.8 187 70.6
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 3.3e-72 275.4 194 66.5
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 7.5e-72 274.2 185 74.1
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 7.5e-72 274.2 190 69.5
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 8.2e-71 270.8 192 69.8
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 2.7e-69 265.8 177 74.6
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 1.7e-68 263.1 181 69.1
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 1.5e-67 260.0 181 68.0
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.5e-67 260.0 229 61.6
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 2.5e-67 259.2 177 69.5
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 3.2e-67 258.8 185 68.1
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 7.2e-67 257.7 169 71.6
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 3.6e-66 255.4 193 62.7
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 4.7e-66 255.0 171 73.1
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 5.2e-65 251.5 158 78.5
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 8.8e-65 250.8 152 78.3
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 8.8e-65 250.8 153 79.7
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 2.6e-64 249.2 163 74.2
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 2.6e-64 249.2 163 74.2
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 2.6e-64 249.2 169 69.8
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 1.7e-63 246.5 169 71.0
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 2.8e-63 245.7 152 78.9
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 1.0e-60 237.3 208 59.6
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 9.8e-56 220.7 140 76.4
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 2.2e-55 219.5 140 75.7
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 2.3e-49 199.5 206 52.4
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.0e-48 196.4 153 68.0
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 3.7e-47 192.2 120 75.8
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 4.6e-45 185.3 119 71.4
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 5.9e-45 184.9 131 66.4
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.3e-44 183.7 112 80.4
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 2.3e-41 172.9 219 47.5
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 1.9e-35 153.3 102 73.5
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 7.3e-35 151.4 133 63.2
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.1e-34 149.8 133 59.4
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 6.4e-31 138.3 185 43.8
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 2.4e-30 136.3 80 81.2
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 3.2e-30 136.0 90 71.1
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 5.6e-27 125.2 71 84.5
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 8.1e-26 121.3 76 76.3
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.1e-25 120.9 140 49.3
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 1.3e-23 114.0 189 40.7
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.4e-22 110.5 72 70.8
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 2.7e-21 106.3 183 36.1
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 1.7e-20 103.6 175 34.3
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 3.0e-20 102.8 130 37.7
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 8.6e-20 101.3 60 81.7
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.5e-19 100.5 170 35.9
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 3.3e-19 99.4 61 82.0
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 2.1e-18 96.7 178 38.8
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-16 90.9 75 62.7
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 1.5e-16 90.5 128 43.0
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 1.7e-12 77.0 73 54.8
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 8.7e-12 74.7 171 30.4
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 9.9e-08 61.2 56 53.6
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 1.9e-06 57.0 33 72.7
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 9.3e-06 54.7 32 78.1
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 9.3e-06 54.7 32 78.1


User provided reference genes

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