Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 3.1e-133 478.4 230 100.0
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 2.3e-120 435.6 225 88.0
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 5.6e-119 431.0 225 88.9
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.6e-118 429.5 224 89.3
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 6.2e-118 427.6 224 87.1
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 8.2e-118 427.2 225 87.6
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 1.4e-117 426.4 225 87.6
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 2.4e-117 425.6 225 87.1
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 5.3e-117 424.5 224 87.5
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.5e-116 422.9 225 85.8
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 4.5e-116 421.4 225 85.8
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 4.5e-116 421.4 225 86.7
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 7.6e-116 420.6 225 85.3
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 1.0e-115 420.2 225 85.3
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 1.7e-115 419.5 225 84.9
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 1.1e-114 416.8 223 85.2
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 1.4e-114 416.4 237 81.9
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 2.5e-114 415.6 225 84.4
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 3.2e-114 415.2 225 82.7
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 3.2e-114 415.2 226 86.7
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 4.2e-114 414.8 227 85.5
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 4.6e-113 411.4 225 83.6
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 4.6e-113 411.4 224 85.3
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 7.9e-113 410.6 225 84.9
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.0e-112 410.2 227 82.4
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 1.3e-112 409.8 274 72.3
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.8e-112 409.5 234 82.1
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 5.1e-112 407.9 228 82.5
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 8.7e-112 407.1 225 80.4
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 8.7e-112 407.1 224 83.9
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 1.1e-111 406.8 225 84.0
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 1.5e-111 406.4 225 83.1
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 1.5e-111 406.4 225 84.4
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 3.3e-111 405.2 225 80.0
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 9.7e-111 403.7 225 80.0
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 2.2e-110 402.5 224 82.6
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 6.3e-110 401.0 225 82.7
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 8.2e-110 400.6 225 84.0
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 1.4e-109 399.8 226 83.2
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 1.8e-109 399.4 250 76.4
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 2.4e-109 399.1 226 83.2
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 3.1e-109 398.7 226 81.4
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 3.1e-109 398.7 226 83.2
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 5.3e-109 397.9 227 80.6
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 5.3e-109 397.9 228 81.1
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 6.9e-109 397.5 225 82.7
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 1.2e-108 396.7 239 79.5
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.5e-108 396.4 225 82.2
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.5e-108 396.4 226 82.7
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 1.5e-108 396.4 227 79.7
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 2.0e-108 396.0 226 82.7
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 2.0e-108 396.0 228 82.9
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 2.6e-108 395.6 225 82.7
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 2.6e-108 395.6 226 81.0
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 5.9e-108 394.4 225 78.7
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 7.7e-108 394.0 231 79.7
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 1.0e-107 393.7 228 81.6
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 2.2e-107 392.5 225 81.3
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.2e-107 392.5 225 82.2
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.2e-107 392.5 225 82.2
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 3.8e-107 391.7 232 81.5
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 6.5e-107 391.0 225 82.7
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 1.1e-106 390.2 242 76.9
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.4e-106 389.8 231 81.4
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 1.4e-106 389.8 224 78.1
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 1.9e-106 389.4 223 80.3
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 9.4e-106 387.1 225 82.7
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 1.6e-105 386.3 215 83.7
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.6e-105 386.3 226 80.5
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 2.7e-105 385.6 224 77.2
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 2.7e-105 385.6 232 80.6
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 2.7e-105 385.6 232 80.6
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 3.6e-105 385.2 209 83.7
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 7.9e-105 384.0 224 78.6
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 1.0e-104 383.6 225 75.6
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 1.8e-104 382.9 227 78.4
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 3.9e-104 381.7 226 79.6
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 3.9e-104 381.7 226 79.6
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 1.9e-103 379.4 229 77.7
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 2.5e-103 379.0 229 78.6
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 4.3e-103 378.3 228 78.1
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 4.3e-103 378.3 228 78.1
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 1.7e-102 376.3 226 79.6
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 2.8e-102 375.6 225 76.0
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 5.3e-101 371.3 210 81.4
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 6.9e-101 370.9 226 77.4
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 1.5e-100 369.8 228 75.9
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 2.0e-100 369.4 208 79.8
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 5.7e-95 351.3 208 76.0
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 4.5e-92 341.7 224 69.6
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 9.7e-87 323.9 228 70.6
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 7.7e-84 314.3 261 62.5
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 1.3e-83 313.5 215 72.1
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 5.5e-82 308.1 163 85.3
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 1.3e-78 297.0 240 65.0
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 3.7e-78 295.4 164 83.5
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 8.2e-78 294.3 229 67.2
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 2.0e-76 289.7 247 60.3
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 2.0e-76 289.7 157 85.4
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 1.1e-74 283.9 267 58.8
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 2.1e-73 279.6 165 78.8
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 1.2e-71 273.9 225 62.7
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 7.5e-71 271.2 225 60.9
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 1.7e-70 270.0 285 56.1
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 1.7e-70 270.0 285 56.1
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 3.7e-70 268.9 167 76.0
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.0e-67 260.8 155 78.1
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 2.3e-67 259.6 225 60.4
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 1.5e-66 256.9 142 80.3
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 4.0e-64 248.8 221 51.6
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 2.7e-60 236.1 226 56.6
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 3.5e-60 235.7 143 75.5
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 1.3e-59 233.8 221 47.1
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 1.5e-58 230.3 135 77.8
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 5.8e-55 218.4 219 45.7
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 2.7e-52 209.5 147 69.4
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 4.6e-52 208.8 119 77.3
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 4.0e-40 169.1 94 78.7
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 8.3e-38 161.4 194 42.8
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 9.2e-37 157.9 198 38.4
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.5e-26 123.2 98 64.3
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 4.3e-26 122.5 69 81.2
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 2.1e-25 120.2 271 30.3
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 4.8e-25 119.0 167 42.5
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 6.9e-24 115.2 70 75.7
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 8.4e-22 108.2 55 85.5
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 2.6e-15 86.7 220 25.5
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.1e-12 77.0 37 89.2
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.3e-09 67.8 169 26.0
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 8.1e-09 65.1 165 26.7
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 8.1e-09 65.1 152 27.0
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 1.1e-08 64.7 183 24.0
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.8e-08 63.9 165 26.1
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 1.8e-08 63.9 215 27.0
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 1.8e-08 63.9 189 28.0
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 4.0e-08 62.8 215 27.0
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 6.9e-08 62.0 152 25.7
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 6.9e-08 62.0 163 27.0
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 6.9e-08 62.0 185 27.0
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 1.2e-07 61.2 192 27.6
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 2.6e-07 60.1 161 26.7
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 2.6e-07 60.1 161 26.7
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 2.6e-07 60.1 187 24.6
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 2.6e-07 60.1 180 25.6
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 2.6e-07 60.1 160 27.5
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 2.6e-07 60.1 163 27.6
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 3.4e-07 59.7 163 26.4
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 3.4e-07 59.7 189 27.5
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 4.5e-07 59.3 169 27.8
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 4.5e-07 59.3 186 26.9
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 5.8e-07 58.9 161 26.1
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 7.6e-07 58.5 193 26.4
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 7.6e-07 58.5 163 26.4
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 7.6e-07 58.5 163 26.4
RcHm_v2.0_Chr5g0011651 Rosa chinensis HOM05D005310 ORTHO05D006920 7.6e-07 58.5 158 25.9
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 1.0e-06 58.2 189 27.5
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 1.0e-06 58.2 193 26.4
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 1.0e-06 58.2 193 26.4
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 1.0e-06 58.2 193 26.4
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 1.3e-06 57.8 181 25.4
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.3e-06 57.8 184 25.0
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 1.3e-06 57.8 192 26.6
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 2.2e-06 57.0 163 25.8
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 2.2e-06 57.0 215 24.7
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 2.9e-06 56.6 167 27.5
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 2.9e-06 56.6 189 27.0
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 3.8e-06 56.2 153 24.8
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 3.8e-06 56.2 165 24.8
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 3.8e-06 56.2 191 24.1
Aqoxy1G01994 Aquilegia oxysepala HOM05D005310 ORTHO05D006920 4.9e-06 55.8 185 25.4
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 4.9e-06 55.8 152 27.0
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 4.9e-06 55.8 163 25.2
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 6.4e-06 55.5 150 24.7
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 6.4e-06 55.5 152 25.7
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 8.4e-06 55.1 152 27.0
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 8.4e-06 55.1 163 23.9
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 8.4e-06 55.1 162 24.7


User provided reference genes

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