Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 7.8e-108 394.0 233 100.0
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 7.9e-44 181.4 195 66.7
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.3e-43 180.6 174 71.8
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.3e-43 180.6 190 70.5
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 3.1e-40 169.5 183 67.8
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 9.0e-40 167.9 174 68.4
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 5.9e-39 165.2 184 67.4
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.9e-38 162.9 176 68.2
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 3.8e-38 162.5 172 70.9
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 8.5e-38 161.4 170 62.4
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.9e-37 160.2 176 67.0
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.5e-37 159.8 176 67.6
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 5.5e-37 158.7 189 66.7
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.2e-36 157.5 183 63.9
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.6e-36 157.1 167 68.3
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.8e-35 153.7 189 54.5
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.8e-35 153.7 184 65.2
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.3e-35 153.3 169 66.9
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.0e-35 152.9 170 66.5
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.1e-34 151.0 191 61.8
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.1e-34 151.0 188 62.8
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.9e-34 150.2 98 79.6
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 3.3e-34 149.4 195 61.0
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.3e-34 149.4 165 66.7
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 9.7e-34 147.9 172 62.2
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.3e-33 147.5 177 65.0
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 1.7e-33 147.1 165 66.1
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 2.2e-33 146.7 178 56.7
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 2.8e-33 146.4 97 77.3
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.7e-33 146.0 182 62.6
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.1e-32 144.4 174 58.6
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-32 144.4 158 62.7
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.8e-32 143.7 98 74.5
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.8e-32 143.7 98 74.5
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.1e-32 142.9 98 75.5
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 4.1e-32 142.5 179 62.6
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 5.3e-32 142.1 96 76.0
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.9e-32 141.7 158 69.0
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.2e-31 141.0 168 63.1
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.5e-31 140.6 94 76.6
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.6e-31 139.8 98 72.4
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 4.5e-31 139.0 98 72.4
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 7.7e-31 138.3 98 71.4
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.3e-30 137.5 191 59.7
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.9e-30 136.3 165 64.2
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 5.0e-30 135.6 187 59.9
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 6.5e-30 135.2 96 72.9
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.1e-29 134.4 96 71.9
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.1e-29 134.4 198 57.6
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 1.4e-29 134.0 96 71.9
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.9e-29 133.7 157 65.6
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 2.5e-29 133.3 98 72.4
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 3.2e-29 132.9 174 45.4
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 4.2e-29 132.5 175 60.6
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 7.2e-29 131.7 93 73.1
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.6e-28 130.6 200 56.5
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.6e-28 130.6 208 54.8
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 2.7e-28 129.8 98 67.3
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 2.7e-28 129.8 93 72.0
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.7e-28 129.8 98 68.4
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 6.1e-28 128.6 139 53.2
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 7.9e-28 128.3 137 54.0
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.8e-27 127.1 92 69.6
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.3e-27 126.7 78 83.3
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.0e-27 126.3 169 58.6
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 3.9e-27 125.9 85 74.1
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 8.8e-27 124.8 86 73.3
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.1e-26 124.4 98 66.3
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.5e-26 124.0 98 67.3
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.3e-26 122.9 87 72.4
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 4.4e-26 122.5 163 60.1
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 4.4e-26 122.5 94 68.1
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 5.7e-26 122.1 87 73.6
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.3e-25 120.9 167 44.3
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.7e-25 120.6 90 71.1
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.7e-25 120.6 98 65.3
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 3.7e-25 119.4 98 64.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 8.2e-25 118.2 239 46.0
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 3.1e-24 116.3 93 64.5
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 2.0e-23 113.6 90 62.2
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.0e-23 113.6 87 67.8
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 5.9e-23 112.1 251 40.2
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 7.7e-23 111.7 88 63.6
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.0e-22 109.0 209 52.2
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.9e-21 107.1 99 63.6
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.9e-21 107.1 160 46.9
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 5.5e-21 105.5 83 68.7
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 9.4e-21 104.8 96 56.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 9.4e-21 104.8 96 56.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 9.4e-21 104.8 96 56.2
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.6e-20 104.0 77 70.1
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.1e-20 103.6 96 58.3
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 2.1e-20 103.6 99 58.6
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.1e-20 103.6 141 52.5
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 6.1e-20 102.1 97 61.9
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 8.0e-20 101.7 224 45.5
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 3.0e-19 99.8 92 54.3
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 3.0e-19 99.8 92 54.3
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 1.1e-18 97.8 81 67.9
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 8.2e-17 91.7 88 61.4
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 8.2e-17 91.7 88 61.4
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 3.1e-16 89.7 80 67.5
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 3.1e-16 89.7 93 51.6
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 4.1e-16 89.4 151 57.0
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 7.0e-16 88.6 79 64.6
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 7.0e-16 88.6 93 52.7
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 2.6e-15 86.7 80 66.2
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 2.2e-14 83.6 184 50.0
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.9e-13 80.5 89 50.6
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 8.0e-12 75.1 48 75.0
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.4e-11 74.3 93 47.3
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.8e-11 73.9 74 55.4
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.0e-11 73.2 79 51.9
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 2.0e-10 70.5 50 68.0
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.6e-10 70.1 88 51.1
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 2.2e-09 67.0 73 52.1
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.8e-08 63.9 83 45.8
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 9.1e-08 61.6 58 55.2
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 5.9e-07 58.9 98 42.9
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 2.9e-06 56.6 89 41.6


User provided reference genes

Program Settings