Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026322m.g Citrus clementina HOM05D008801 ORTHO05D010819 3.0e-68 262.7 256 100.0
Glyma.01G190900 Glycine max HOM05D008801 ORTHO05D010819 5.9e-16 89.0 85 63.5
Glyma.11G051300 Glycine max HOM05D008801 ORTHO05D010819 2.2e-15 87.0 85 62.4
VMungo1215G0318 Vigna mungo HOM05D008801 ORTHO05D010819 2.7e-13 80.1 71 62.0
Glyma.05G102100 Glycine max HOM05D008801 ORTHO05D010819 3.6e-13 79.7 82 57.3
Phvul.002G014100 Phaseolus vulgaris HOM05D008801 ORTHO05D010819 4.6e-13 79.3 71 60.6
Carub.0007s0283 Capsella rubella HOM05D010159 ORTHO05D012416 7.9e-13 78.6 88 56.8
Gohir.A11G218200 Gossypium hirsutum HOM05D008801 ORTHO05D010819 2.3e-12 77.0 115 53.9
arahy.Tifrunner.gnm1.ann1.N2JMJ4 Arachis hypogaea HOM05D008801 ORTHO05D010819 6.7e-12 75.5 264 60.6
MELO3C007601.2 Cucumis melo HOM05D022074 ORTHO05D028887 1.1e-11 74.7 79 63.3
Ca_24714_v3 Cicer arietinum L. HOM05D008801 ORTHO05D010819 1.5e-11 74.3 86 57.0
Ca_24729_v3 Cicer arietinum L. HOM05D008801 ORTHO05D010819 1.5e-11 74.3 86 57.0
THA.LOC104807612 Tarenaya hassleriana HOM05D008801 ORTHO05D010819 9.7e-11 71.6 80 53.8
Gohir.D12G072500 Gossypium hirsutum HOM05D008801 ORTHO05D010819 1.3e-10 71.2 99 48.5
Gorai.008G079800 Gossypium raimondii HOM05D008801 ORTHO05D010819 1.3e-10 71.2 99 48.5
Phvul.003G238200 Phaseolus vulgaris HOM05D008801 ORTHO05D010819 1.3e-10 71.2 59 66.1
CSS0039488 Camellia sinensis var. sinensis HOM05D013097 ORTHO05D010819 2.8e-10 70.1 66 60.6
Manes.12G113000 Manihot esculenta HOM05D008801 ORTHO05D010819 2.8e-10 70.1 60 61.7
Duzib187G0657 Durio zibethinus HOM05D008801 ORTHO05D010819 3.7e-10 69.7 96 52.1
Aa31LG6G14310 Aethionema arabicum HOM05D010159 ORTHO05D012416 4.8e-10 69.3 68 60.3
CiPaw.01G008400 Carya illinoinensis HOM05D008801 ORTHO05D010819 4.8e-10 69.3 58 65.5
Lalb_Chr16g0378731 Lupinus albus HOM05D008801 ORTHO05D010819 6.3e-10 68.9 259 41.3
arahy.Tifrunner.gnm1.ann1.EBVI20 Arachis hypogaea HOM05D008801 ORTHO05D010819 8.2e-10 68.6 268 56.3
TPR.G26876 Trifolium pratense HOM05D008801 ORTHO05D010819 8.2e-10 68.6 72 62.5
AT4G37450 Arabidopsis thaliana HOM05D010159 ORTHO05D012416 2.4e-09 67.0 70 55.7
CSS0031242 Camellia sinensis var. sinensis HOM05D013097 ORTHO05D010819 2.4e-09 67.0 74 54.1
Thecc.01G067400 Theobroma cacao HOM05D008801 ORTHO05D010819 3.1e-09 66.6 114 47.4
COL.COLO4_11520 Corchorus olitorius HOM05D008801 ORTHO05D010819 6.9e-09 65.5 57 63.2
Duzib147G0385 Durio zibethinus HOM05D008801 ORTHO05D010819 1.2e-08 64.7 93 49.5
Medtr5g016250 Medicago truncatula HOM05D008801 ORTHO05D010819 4.5e-08 62.8 71 56.3
SGA_v2.0_scaffold15G07398 Striga asiatica HOM05D008801 ORTHO05D010819 4.5e-08 62.8 56 60.7
Medtr4g095280 Medicago truncatula HOM05D008801 ORTHO05D010819 7.7e-08 62.0 84 51.2
PGR004G0311 Punica granatum HOM05D012197 ORTHO05D017034 1.0e-07 61.6 260 42.3
TWI53G1246 Tripterygium wilfordii HOM05D013097 ORTHO05D010819 1.3e-07 61.2 82 54.9
Sabra05G0114700 Salix brachista HOM05D030035 ORTHO05D030506 1.7e-07 60.8 77 53.2
Sabra05G0115800 Salix brachista HOM05D030035 ORTHO05D030506 1.7e-07 60.8 77 53.2
AT2G23130 Arabidopsis thaliana HOM05D010159 ORTHO05D016615 2.2e-07 60.5 108 47.2
Ca_13935_v3 Cicer arietinum L. HOM05D008801 ORTHO05D010819 2.9e-07 60.1 57 59.6
Duzib264G0993 Durio zibethinus HOM05D008801 ORTHO05D010819 2.9e-07 60.1 57 63.2
VMungo0251G0048 Vigna mungo HOM05D008801 ORTHO05D010819 2.9e-07 60.1 59 57.6
CiPaw.02G005000 Carya illinoinensis HOM05D013097 ORTHO05D010819 3.8e-07 59.7 51 54.9
ECA238G0402 Erigeron canadensis HOM05D013097 ORTHO05D010819 5.0e-07 59.3 84 46.4
Haze_15326 Corylus avellana HOM05D055950 ORTHO05D043579 1.1e-06 58.2 89 50.6
Sp7g35110 Schrenkiella parvula HOM05D010159 ORTHO05D012416 1.4e-06 57.8 90 51.1
AUR62038272 Chenopodium quinoa HOM05D017711 ORTHO05D021203 2.5e-06 57.0 102 46.1
Gohir.A12G067800 Gossypium hirsutum HOM05D008801 ORTHO05D010819 3.2e-06 56.6 99 43.4
Lalb_Chr05g0213471 Lupinus albus HOM05D008801 ORTHO05D010819 3.2e-06 56.6 73 47.9
Cc07_g06680 Coffea canephora HOM05D013097 ORTHO05D023795 5.5e-06 55.8 73 54.8
Gohir.A12G068100 Gossypium hirsutum HOM05D008801 ORTHO05D010819 9.4e-06 55.1 94 42.6


User provided reference genes

Program Settings