Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.1e-147 526.6 260 100.0
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.6e-112 409.1 264 78.0
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 9.6e-107 390.6 264 73.5
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.1e-105 387.1 266 74.1
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.1e-105 387.1 266 74.1
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 5.4e-102 374.8 225 77.8
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 3.9e-100 368.6 260 69.6
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.5e-99 366.7 264 69.3
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.5e-99 365.9 227 75.8
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.3e-99 365.5 248 72.6
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.6e-99 364.8 256 71.9
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.3e-98 363.6 238 71.8
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.6e-98 362.1 262 70.2
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.6e-98 362.1 264 68.2
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 8.1e-98 360.9 218 76.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 3.1e-97 359.0 225 77.3
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 6.9e-97 357.8 228 76.3
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.6e-96 355.9 245 72.2
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 2.6e-96 355.9 201 81.6
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 3.4e-96 355.5 253 70.4
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 5.8e-96 354.8 216 77.3
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 5.8e-96 354.8 257 68.9
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.3e-95 353.6 261 67.8
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.7e-95 353.2 253 69.2
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.9e-95 352.4 263 68.1
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.9e-95 351.7 244 70.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 4.9e-95 351.7 258 70.5
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 8.4e-95 350.9 250 69.2
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-94 350.5 249 67.9
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-94 350.5 257 65.8
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.1e-94 350.5 249 68.3
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.9e-94 349.7 212 76.4
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 1.9e-94 349.7 257 69.6
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-94 349.7 237 69.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.4e-94 349.4 203 78.8
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 2.4e-94 349.4 257 68.5
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.4e-94 349.4 249 69.5
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.4e-94 349.4 234 73.9
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.4e-94 348.2 249 67.5
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 5.4e-94 348.2 233 73.4
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 9.3e-94 347.4 231 71.9
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 2.1e-93 346.3 198 79.3
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.0e-92 344.0 241 71.0
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.0e-92 344.0 233 71.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.3e-92 343.6 247 69.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.3e-92 342.8 239 70.7
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.3e-92 342.8 260 68.1
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.9e-92 342.0 235 70.6
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.1e-92 341.7 264 65.9
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 5.1e-92 341.7 240 69.6
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.7e-92 341.3 220 74.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.1e-91 340.5 261 64.4
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 3.3e-91 339.0 235 70.2
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.3e-91 339.0 235 70.2
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 7.4e-91 337.8 261 65.9
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.7e-90 335.5 254 67.7
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.7e-90 335.5 224 72.8
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 4.8e-90 335.1 236 69.9
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 6.2e-90 334.7 264 65.2
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.1e-89 334.0 201 76.6
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 1.8e-89 333.2 263 64.3
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.4e-89 332.8 226 70.4
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 4.0e-89 332.0 253 66.0
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 9.0e-89 330.9 263 63.9
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 9.0e-89 330.9 188 81.9
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 1.2e-88 330.5 213 74.2
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.5e-88 330.1 206 74.8
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.5e-88 330.1 245 68.2
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 7.6e-88 327.8 246 66.3
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.7e-87 326.6 257 62.3
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-87 326.2 263 63.9
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.9e-87 325.9 249 64.7
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 3.8e-87 325.5 227 69.6
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 8.4e-87 324.3 211 71.1
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.1e-86 323.9 221 68.3
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 1.1e-86 323.9 243 64.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.4e-86 323.6 198 76.8
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.4e-86 323.6 245 63.7
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.9e-86 323.2 190 78.4
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.4e-86 322.8 190 78.4
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.4e-86 322.8 197 73.1
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 2.4e-86 322.8 203 74.4
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 4.2e-86 322.0 254 63.4
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.2e-86 322.0 247 66.8
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.1e-85 319.7 261 61.3
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 2.7e-85 319.3 253 61.3
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.7e-85 319.3 234 67.1
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 3.5e-85 318.9 253 62.5
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 3.5e-85 318.9 253 62.5
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 6.0e-85 318.2 197 73.1
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 6.0e-85 318.2 253 65.6
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.0e-84 317.4 250 62.0
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.0e-84 315.8 254 60.2
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 5.1e-84 315.1 254 60.2
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.5e-83 312.8 207 69.1
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 3.3e-83 312.4 197 73.6
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 5.6e-83 311.6 258 64.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.3e-82 310.5 239 66.1
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.3e-82 310.5 225 70.2
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 3.7e-82 308.9 196 73.5
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.5e-80 303.5 200 71.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.4e-80 302.4 160 87.5
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 2.2e-79 299.7 228 65.8
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.2e-79 299.7 235 66.0
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.9e-79 299.3 198 72.7
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 6.5e-79 298.1 229 63.3
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 4.2e-78 295.4 198 71.2
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 7.1e-78 294.7 202 71.8
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 1.2e-77 293.9 157 85.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-77 293.5 229 65.9
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 3.0e-76 289.3 167 77.8
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.3e-75 285.4 190 70.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 1.3e-74 283.9 158 83.5
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 3.7e-74 282.3 161 78.9
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 6.3e-74 281.6 198 65.7
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 2.5e-70 269.6 243 58.0
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.4e-65 253.8 184 63.0
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.4e-65 253.1 258 52.7
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.1e-62 244.2 238 56.7
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 5.5e-62 241.9 181 55.8
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 7.7e-56 221.5 148 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 3.9e-52 209.1 220 47.7
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.9e-52 209.1 181 56.9
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 5.7e-51 205.3 131 68.7
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.0e-47 194.5 152 67.8
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.1e-45 186.8 102 82.4
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.0e-45 184.9 103 79.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 4.5e-40 169.1 108 70.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.1e-38 164.5 126 69.0
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 8.8e-36 154.8 93 74.2
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 4.4e-35 152.5 96 71.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-31 140.6 101 68.3
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.5e-30 134.8 197 40.1
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.8e-21 106.7 151 45.0
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.4e-20 104.4 69 73.9
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 4.4e-19 99.4 219 32.9
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 8.3e-18 95.1 53 83.0
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.8e-17 94.0 119 49.6
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 3.2e-17 93.2 179 34.1
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.2e-16 91.3 89 58.4
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 2.7e-16 90.1 132 39.4
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 4.3e-14 82.8 162 31.5
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 8.0e-13 78.6 53 66.0
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.4e-12 77.8 75 49.3
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 4.0e-12 76.3 258 27.9
Cre06.g278096 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 5.8e-11 72.4 125 32.0
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.9e-10 70.1 105 43.8
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 4.9e-10 69.3 131 31.3
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.4e-09 67.0 37 83.8
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.3e-07 60.5 84 38.1
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.5e-06 57.0 110 31.8
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 9.5e-06 55.1 92 38.0


User provided reference genes

Program Settings