Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 3.7e-170 601.7 351 100.0
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 7.3e-110 401.4 353 64.6
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 4.0e-108 395.6 348 63.5
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 8.9e-108 394.4 354 64.4
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.6e-107 392.9 347 64.3
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.3e-106 390.6 350 62.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.1e-105 387.5 346 60.7
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.2e-105 386.0 346 64.5
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 4.2e-105 385.6 347 63.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.1e-104 383.3 349 67.0
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 3.0e-103 379.4 337 70.6
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.9e-103 379.0 349 60.7
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.6e-102 374.4 353 64.9
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.3e-101 374.0 350 60.9
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.3e-101 374.0 350 60.9
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.8e-100 370.2 353 62.6
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.8e-100 370.2 353 62.6
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.2e-99 367.5 350 60.9
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.2e-99 367.5 346 62.4
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 4.4e-99 365.5 351 57.5
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.1e-97 360.9 346 57.5
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 7.1e-97 358.2 346 59.8
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-94 349.7 357 62.2
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.3e-94 349.0 346 58.1
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 7.3e-94 348.2 350 57.7
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 3.6e-93 345.9 333 64.0
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-93 345.1 357 58.3
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.1e-92 344.4 357 57.1
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.1e-92 344.4 354 59.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.1e-92 344.4 353 62.0
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.1e-92 342.8 357 57.1
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.4e-91 339.3 342 58.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.9e-90 335.5 356 55.9
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 8.4e-90 334.7 357 56.9
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.4e-90 334.7 357 56.9
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.1e-89 334.3 343 57.4
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.2e-89 332.8 344 54.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 7.1e-89 331.6 354 55.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.6e-88 330.5 346 56.6
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.6e-88 328.9 349 53.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.0e-87 327.8 349 53.0
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.0e-87 326.2 331 54.4
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.0e-87 326.2 354 55.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 6.7e-87 325.1 355 56.6
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.8e-85 319.7 352 57.1
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 4.8e-85 318.9 365 53.4
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 4.8e-85 318.9 349 55.0
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 9.0e-84 314.7 337 55.5
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 2.0e-83 313.5 348 53.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 2.0e-83 313.5 348 53.4
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 2.6e-83 313.2 346 57.5
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.2e-82 310.1 346 53.2
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 8.4e-82 308.1 350 55.1
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.9e-81 307.0 351 51.9
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 3.2e-81 306.2 351 51.9
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 4.2e-81 305.8 354 54.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.2e-81 305.8 351 54.7
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.3e-79 300.1 358 53.6
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.0e-79 299.7 352 51.7
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.9e-79 299.3 355 53.0
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 6.7e-79 298.5 351 54.1
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 6.7e-79 298.5 351 54.1
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.5e-78 296.6 377 49.9
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 3.3e-78 296.2 348 52.9
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.4e-78 295.0 362 51.9
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 9.6e-78 294.7 354 53.4
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 9.6e-78 294.7 354 53.4
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 4.8e-77 292.4 342 57.9
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.8e-77 292.4 375 50.9
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 4.8e-77 292.4 355 52.7
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.4e-76 290.0 347 51.9
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 6.9e-76 288.5 340 54.1
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 6.9e-76 288.5 372 50.0
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.4e-75 286.2 358 50.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 5.8e-75 285.4 341 51.0
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 7.6e-75 285.0 356 50.8
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.0e-74 284.6 351 55.3
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.0e-74 284.6 351 49.6
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 8.4e-74 281.6 349 54.2
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.2e-73 279.3 384 49.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 9.3e-73 278.1 350 50.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.6e-72 277.3 339 51.9
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.5e-70 270.8 335 54.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 7.4e-70 268.5 322 52.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.2e-69 266.9 354 51.4
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 4.8e-69 265.8 371 47.7
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 6.3e-69 265.4 351 48.1
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.1e-68 263.1 364 47.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.3e-66 257.7 379 43.5
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.4e-65 254.2 355 45.9
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.9e-65 253.8 355 47.0
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 3.2e-65 253.1 350 47.7
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 6.7e-63 245.4 347 53.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.5e-62 243.4 277 53.8
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 7.4e-62 241.9 352 52.6
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.7e-61 240.7 352 51.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.4e-60 237.7 349 49.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 6.9e-60 235.3 346 45.4
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 2.0e-59 233.8 360 42.8
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 6.5e-58 228.8 303 48.8
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 6.5e-58 228.8 350 45.4
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.9e-57 227.3 349 45.3
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.5e-57 226.9 374 44.1
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.0e-55 219.9 347 42.4
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.3e-53 214.5 347 43.5
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.7e-53 214.2 350 40.9
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.8e-53 213.4 347 40.9
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.1e-52 211.5 350 41.4
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.0e-51 207.2 332 47.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 5.9e-51 205.7 354 43.2
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.7e-51 205.3 339 44.8
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.3e-50 204.5 340 42.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.3e-50 204.5 340 42.4
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.2e-49 199.5 317 45.7
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 2.1e-48 197.2 293 52.2
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.6e-48 196.4 344 46.5
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 4.7e-48 196.1 351 39.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 8.0e-48 195.3 346 42.2
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.1e-41 174.9 346 37.6
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.5e-41 174.5 207 53.1
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 9.4e-41 171.8 321 37.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 8.0e-40 168.7 344 36.6
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.2e-39 166.0 258 49.6
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.6e-38 163.7 312 39.4
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.4e-38 163.3 315 38.1
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.7e-37 161.0 354 40.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 2.2e-37 160.6 392 35.2
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.4e-36 157.1 132 68.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 3.5e-35 153.3 322 39.8
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.5e-35 152.9 335 34.0
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.0e-34 151.8 316 36.4
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.8e-31 141.0 171 51.5
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.2e-29 134.0 150 52.7
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.1e-28 131.7 172 55.2
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.4e-23 114.8 197 44.2
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.9e-21 106.3 109 52.3
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.4e-20 104.8 152 40.8
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.8e-20 104.4 429 28.7
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.5e-17 94.0 251 35.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 2.1e-16 90.9 102 51.0
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.7e-13 81.3 103 52.4
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.2e-13 80.9 85 51.8
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 7.0e-12 75.9 119 45.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.6e-11 74.7 346 29.8
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 6.6e-10 69.3 150 37.3
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 8.1e-08 62.4 50 56.0
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 2.3e-07 60.8 50 62.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 3.1e-07 60.5 50 54.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.8e-07 59.3 90 37.8
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 3.4e-06 57.0 60 48.3


User provided reference genes

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