Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.4e-188 662.9 358 100.0
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 8.6e-90 334.7 371 60.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 9.5e-89 331.3 379 58.0
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 2.8e-88 329.7 377 57.3
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.8e-87 327.0 366 59.8
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.7e-85 320.5 380 58.4
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 6.4e-85 318.5 383 56.7
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 6.4e-85 318.5 387 57.9
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 7.0e-84 315.1 385 55.8
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.2e-83 314.3 384 59.4
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 3.5e-83 312.8 386 58.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.0e-82 311.2 376 56.9
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.0e-82 311.2 375 56.8
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.3e-82 310.8 377 56.0
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 3.0e-82 309.7 378 58.5
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.1e-81 307.8 367 57.8
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.9e-81 307.0 394 54.3
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 3.3e-81 306.2 375 55.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 3.3e-81 306.2 373 57.1
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 9.5e-81 304.7 375 57.1
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 5.2e-79 298.9 361 56.2
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.3e-77 294.3 372 54.6
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 8.3e-77 291.6 374 53.7
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.3e-77 291.6 388 53.9
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.4e-76 290.8 381 55.4
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.9e-76 290.4 381 52.8
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 5.4e-76 288.9 368 54.6
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 7.0e-76 288.5 369 54.2
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 2.7e-75 286.6 383 53.5
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 3.0e-74 283.1 385 51.4
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 6.6e-74 282.0 376 54.0
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.5e-73 280.0 378 53.4
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.3e-73 279.6 374 55.1
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-72 277.7 376 54.0
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.6e-72 276.2 395 51.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.6e-72 276.2 384 52.6
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.6e-72 276.2 377 53.6
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.2e-72 275.4 367 54.8
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.2e-72 275.4 374 52.7
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.1e-72 275.0 383 53.0
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.1e-71 274.6 373 51.2
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.8e-71 273.9 379 54.1
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 2.3e-71 273.5 390 50.5
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 4.0e-71 272.7 380 51.3
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 5.2e-71 272.3 367 51.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 8.9e-71 271.6 384 51.0
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 8.9e-71 271.6 372 52.2
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.5e-70 270.8 375 52.0
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 4.4e-70 269.2 385 53.0
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 7.5e-70 268.5 360 52.2
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 2.2e-69 266.9 370 52.2
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.9e-69 265.8 330 57.0
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.4e-68 264.2 376 51.3
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.4e-68 264.2 370 52.4
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.2e-67 261.2 377 52.0
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 3.5e-67 259.6 379 50.4
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.0e-67 258.8 367 51.5
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.0e-66 258.1 390 48.2
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.7e-66 257.3 375 49.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 3.0e-66 256.5 371 52.6
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.9e-66 256.1 363 52.1
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.9e-65 253.8 364 50.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.5e-65 253.4 377 49.6
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.3e-65 253.1 454 46.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 7.3e-65 251.9 372 51.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.5e-65 251.5 362 51.4
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.6e-64 249.6 368 50.3
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 4.7e-64 249.2 375 50.4
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.8e-63 247.3 379 49.1
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.9e-63 245.0 362 50.8
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.5e-62 244.2 370 48.6
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.4e-62 243.0 387 51.7
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 4.4e-62 242.7 359 47.6
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.1e-60 238.0 368 47.8
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.9e-60 237.3 372 50.3
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.2e-60 236.1 351 49.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 9.2e-60 235.0 374 48.9
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-59 234.6 366 49.5
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.7e-59 233.4 361 50.1
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 6.0e-59 232.3 345 49.0
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.8e-59 231.9 361 47.9
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-58 230.7 369 48.8
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 3.9e-58 229.6 335 52.5
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.1e-58 229.2 361 48.8
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.1e-58 229.2 371 47.2
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 3.3e-57 226.5 368 48.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 4.3e-57 226.1 370 47.6
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 7.3e-57 225.3 374 48.9
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.1e-55 221.5 369 45.5
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.1e-55 219.9 287 51.9
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.1e-55 219.9 360 47.2
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 5.2e-55 219.2 337 47.8
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 6.9e-55 218.8 337 50.4
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 9.0e-55 218.4 249 58.2
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.2e-54 218.0 365 48.5
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-54 218.0 440 41.4
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.4e-54 216.1 348 48.6
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 4.9e-53 212.6 185 70.3
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 4.9e-53 212.6 377 46.7
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 6.4e-53 212.2 330 49.1
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.4e-52 211.1 358 44.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 9.3e-52 208.4 366 45.6
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.6e-51 207.6 362 42.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-51 207.2 441 41.0
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.1e-51 207.2 357 43.7
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.5e-51 206.5 321 49.2
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.3e-50 203.8 330 45.5
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.0e-50 203.4 325 48.3
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.1e-50 202.6 447 40.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.3e-49 199.5 372 45.4
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 9.6e-49 198.4 396 45.5
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.3e-48 198.0 375 43.2
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.8e-48 196.1 365 45.5
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 6.2e-48 195.7 387 43.9
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 8.1e-48 195.3 369 46.1
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-47 194.9 369 45.3
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.1e-47 194.9 362 40.9
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 4.0e-47 193.0 374 44.1
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 5.3e-47 192.6 368 44.6
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 9.9e-46 188.3 334 42.2
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.3e-45 188.0 368 43.2
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.7e-45 187.6 362 42.0
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 4.9e-45 186.0 342 46.8
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.4e-44 184.5 371 43.1
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.2e-44 183.0 366 41.0
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 4.6e-43 179.5 361 42.9
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 2.3e-42 177.2 330 42.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.3e-42 177.2 362 42.5
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 5.1e-42 176.0 326 44.8
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 5.6e-41 172.6 360 42.8
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 9.6e-41 171.8 318 43.4
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.1e-40 170.6 231 54.5
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 3.7e-40 169.9 358 41.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 3.4e-38 163.3 335 40.6
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 3.4e-38 163.3 299 43.1
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 9.9e-38 161.8 366 38.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.7e-37 161.0 351 40.5
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 2.7e-35 153.7 381 37.8
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 2.7e-35 153.7 330 39.1
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.5e-33 147.1 337 40.4
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.5e-33 147.1 340 38.8
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.5e-33 147.1 340 38.8
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.3e-32 144.8 389 37.0
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 8.2e-32 142.1 274 43.8
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 9.0e-31 138.7 317 37.9
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 9.0e-31 138.7 317 37.9
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.6e-30 137.1 380 35.5
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 5.8e-30 136.0 208 46.2
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 2.2e-29 134.0 342 38.9
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.2e-29 134.0 280 42.5
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 2.9e-29 133.7 345 38.0
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.8e-29 133.3 130 68.5
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 8.4e-29 132.1 265 45.3
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.9e-28 131.0 245 44.5
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.5e-28 130.6 318 38.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.5e-28 130.6 318 38.4
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 9.3e-28 128.6 293 38.2
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 4.6e-27 126.3 249 43.0
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.0e-26 123.6 282 38.3
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.9e-26 123.2 208 45.7
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 8.7e-26 122.1 277 38.3
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.7e-26 122.1 291 41.6
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 3.3e-25 120.2 282 37.9
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.8e-23 114.4 314 36.0
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 2.6e-22 110.5 236 41.5
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 3.4e-22 110.2 134 56.0
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.2e-20 103.2 336 34.2
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.2e-20 103.2 336 34.2
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.3e-18 97.4 208 45.7
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.3e-18 97.4 271 36.2
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.3e-17 93.2 351 31.3
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-11 75.1 57 71.9
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-11 73.9 57 70.2
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 3.0e-10 70.5 325 28.0
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 9.7e-09 65.5 425 28.9
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 2.8e-08 63.9 104 36.5
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.1e-07 60.5 72 44.4
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.9e-06 56.2 107 40.2


User provided reference genes

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