Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.1e-245 852.8 430 100.0
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 9.7e-173 610.5 417 75.1
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 8.5e-169 597.4 399 75.9
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 4.2e-168 595.1 388 76.8
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 7.2e-168 594.3 397 77.1
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 2.1e-167 592.8 432 72.0
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.0e-166 588.6 380 78.2
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.6e-165 585.9 403 75.2
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 5.7e-165 584.7 387 76.7
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 9.7e-165 583.9 406 73.6
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.3e-164 583.6 388 77.6
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 1.7e-164 583.2 376 77.7
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 8.3e-164 580.9 431 71.9
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.0e-161 573.9 387 75.2
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.9e-161 572.4 387 75.7
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.5e-161 571.2 387 75.5
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 1.5e-160 570.1 422 69.4
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.5e-160 570.1 363 78.5
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 5.5e-160 568.2 372 76.9
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 9.4e-160 567.4 423 69.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 2.7e-159 565.8 433 66.7
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 6.1e-159 564.7 391 74.2
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.0e-158 563.9 391 73.4
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.0e-158 563.9 425 68.0
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 1.8e-158 563.1 377 75.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 4.0e-158 562.0 433 67.9
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 5.2e-158 561.6 407 70.0
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.2e-157 560.5 398 71.9
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 1.5e-157 560.1 429 66.4
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.0e-157 559.7 382 73.6
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 2.6e-157 559.3 388 72.7
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 3.4e-157 558.9 406 69.7
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 4.4e-157 558.5 432 65.5
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 9.8e-157 557.4 404 69.6
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.3e-156 557.0 390 71.5
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 3.7e-156 555.4 386 71.2
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 4.8e-156 555.1 405 69.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 6.3e-156 554.7 399 72.9
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 6.3e-156 554.7 372 73.1
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 8.3e-156 554.3 384 72.1
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 8.3e-156 554.3 392 72.2
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 8.3e-156 554.3 409 67.7
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.1e-155 553.9 386 71.0
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.4e-155 553.5 383 72.1
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.8e-155 553.1 376 73.4
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 3.1e-155 552.4 386 71.5
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 3.1e-155 552.4 402 69.9
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 4.1e-155 552.0 412 70.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 7.0e-155 551.2 406 69.7
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 7.0e-155 551.2 406 69.7
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 7.0e-155 551.2 422 67.5
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 9.1e-155 550.8 387 72.6
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.6e-154 550.1 398 70.6
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 1.6e-154 550.1 392 70.7
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.0e-154 549.7 392 70.9
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.7e-154 549.3 400 69.5
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 3.5e-154 548.9 380 72.1
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 5.9e-154 548.1 372 73.1
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.7e-153 546.6 395 71.1
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 2.3e-153 546.2 392 71.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 2.3e-153 546.2 414 69.1
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 1.9e-152 543.1 374 73.3
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.9e-152 543.1 369 72.4
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 5.5e-152 541.6 400 68.0
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 2.8e-151 539.3 376 70.5
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 4.7e-151 538.5 384 70.3
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 6.1e-151 538.1 431 65.4
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 8.0e-151 537.7 387 71.1
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.8e-150 534.6 380 70.8
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 8.9e-150 534.3 397 68.3
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 1.5e-149 533.5 385 69.6
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 2.0e-149 533.1 473 60.9
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.0e-149 533.1 398 69.1
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.6e-149 532.7 400 68.0
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.4e-149 532.3 361 74.2
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.7e-149 531.6 396 68.7
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.3e-148 530.4 399 69.4
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 2.2e-148 529.6 378 70.6
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 4.9e-148 528.5 383 68.7
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.4e-147 526.9 367 72.8
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.4e-147 526.9 367 72.8
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.5e-146 522.3 366 71.9
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 7.8e-146 521.2 386 68.4
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.9e-145 519.2 399 67.9
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 7.3e-144 514.6 374 71.4
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 7.3e-144 514.6 374 71.4
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.4e-142 510.4 350 74.9
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 3.1e-142 509.2 378 71.2
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 4.0e-142 508.8 416 63.0
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 1.5e-141 506.9 386 68.1
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 3.7e-140 502.3 376 66.5
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 1.9e-139 500.0 379 68.3
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 5.4e-139 498.4 377 66.0
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 4.7e-127 458.8 377 62.3
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.8e-126 456.8 371 62.3
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 5.2e-126 455.3 366 63.1
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 5.2e-126 455.3 395 62.0
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 2.2e-124 449.9 363 66.4
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.9e-120 436.8 372 61.3
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 4.3e-120 435.6 379 59.9
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 1.1e-118 431.0 380 59.2
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.0e-117 426.8 376 56.4
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 2.1e-114 416.8 377 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 7.8e-114 414.8 388 55.2
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.3e-112 409.1 377 55.7
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 3.4e-109 399.4 376 55.3
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 5.8e-109 398.7 388 53.6
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 8.7e-105 384.8 378 56.6
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 6.2e-103 378.6 383 50.7
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.3e-95 354.4 307 62.2
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.8e-95 353.2 321 58.9
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.8e-93 345.5 225 72.9
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.4e-91 340.9 276 64.1
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 9.3e-91 338.2 394 47.7
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.0e-89 333.2 317 54.6
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 7.7e-77 292.0 399 42.1
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.8e-76 289.7 177 80.2
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.8e-76 289.7 177 80.2
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 2.0e-64 250.8 383 41.3
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.8e-54 217.6 167 64.7
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 4.2e-51 206.5 430 36.3
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 5.0e-44 183.0 112 78.6
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.5e-40 169.1 135 65.9
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.7e-39 166.8 124 66.1
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 4.9e-39 166.4 398 33.4
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.0e-38 162.5 146 63.0
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 4.9e-31 139.8 82 76.8
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.4e-30 137.5 390 32.6
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 5.1e-12 76.6 72 55.6
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.5e-11 74.3 73 53.4
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.5e-11 74.3 73 53.4
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.3e-09 67.8 108 44.4
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 8.9e-09 65.9 346 24.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.7e-07 60.5 424 23.8
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.4e-06 58.5 429 24.9


User provided reference genes

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