Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.7e-279 965.3 462 100.0
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.6e-210 736.1 461 76.4
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.9e-204 714.9 456 75.4
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 8.8e-204 713.8 442 76.7
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.3e-202 709.9 455 77.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.7e-202 708.4 456 74.6
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.7e-202 708.4 469 74.2
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.8e-201 706.1 465 74.2
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.2e-200 703.4 442 77.1
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.6e-200 702.2 465 73.5
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 4.5e-200 701.4 452 74.3
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 5.9e-200 701.0 458 74.0
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.0e-199 700.3 440 75.2
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.0e-199 700.3 470 73.4
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.0e-199 700.3 452 74.1
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.3e-199 699.9 454 74.4
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.7e-199 699.5 455 75.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 2.2e-199 699.1 455 74.7
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 6.5e-199 697.6 396 81.3
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.5e-199 697.6 447 75.2
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.1e-198 696.8 455 75.6
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.4e-198 696.4 454 74.0
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.4e-198 696.4 470 72.3
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.9e-198 696.0 441 74.6
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 2.5e-198 695.7 453 74.0
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 7.2e-198 694.1 439 76.1
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 9.4e-198 693.7 465 72.9
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.6e-197 693.0 463 73.4
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 2.1e-197 692.6 444 75.0
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 2.7e-197 692.2 467 74.5
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 7.9e-197 690.6 441 74.4
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.0e-196 690.3 460 72.8
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.4e-196 689.9 456 73.7
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.8e-196 689.5 446 76.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.8e-196 689.5 438 75.3
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.1e-196 688.0 442 75.3
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 8.8e-196 687.2 457 72.4
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.1e-195 686.8 460 74.8
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.1e-195 686.8 441 75.1
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-195 686.0 457 72.4
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-195 686.0 463 72.4
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 3.3e-195 685.3 469 72.1
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 5.7e-195 684.5 457 73.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 5.7e-195 684.5 467 71.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 5.7e-195 684.5 449 75.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 7.4e-195 684.1 457 74.0
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 7.4e-195 684.1 458 74.2
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 9.7e-195 683.7 457 74.0
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.7e-194 682.9 469 71.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.7e-194 682.9 469 71.0
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.2e-194 682.6 443 74.9
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 3.7e-194 681.8 448 73.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.7e-194 681.8 455 73.0
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 4.8e-194 681.4 445 73.9
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.8e-194 681.4 473 71.2
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.8e-194 681.4 463 73.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.4e-193 679.9 457 73.1
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.4e-193 679.1 465 70.3
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 4.1e-193 678.3 442 73.8
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 9.1e-193 677.2 459 72.8
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.2e-192 676.8 439 73.3
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.2e-192 676.8 438 73.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.0e-192 676.0 469 70.8
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.0e-192 676.0 457 72.4
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.0e-192 676.0 437 74.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.0e-192 676.0 397 78.1
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.5e-192 675.2 468 70.5
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 3.5e-192 675.2 448 73.7
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 4.5e-192 674.9 453 72.4
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.9e-192 674.5 436 74.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 7.7e-192 674.1 445 72.1
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 7.7e-192 674.1 464 71.3
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 7.7e-192 674.1 414 77.1
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.3e-191 673.3 447 73.4
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.7e-191 672.9 439 73.6
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.2e-191 672.5 457 72.2
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.8e-191 671.8 442 73.5
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 3.8e-191 671.8 439 73.3
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 5.0e-191 671.4 464 71.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.2e-190 668.3 439 73.3
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 5.5e-190 667.9 435 72.9
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 5.5e-190 667.9 444 73.2
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 7.2e-190 667.5 443 72.0
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 9.4e-190 667.2 459 71.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.6e-189 666.4 442 71.5
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.6e-189 666.4 438 72.1
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.6e-189 666.4 446 71.5
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.1e-189 666.0 440 71.6
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.6e-189 665.2 452 70.4
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 6.1e-189 664.5 442 71.0
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.0e-188 663.7 397 77.6
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 4.0e-188 661.8 444 70.7
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 5.2e-188 661.4 361 83.1
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.7e-188 661.0 449 70.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.1e-187 660.2 440 70.9
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.5e-187 659.8 367 82.0
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.0e-187 659.4 504 68.3
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 3.3e-187 658.7 442 71.3
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 7.5e-187 657.5 408 75.7
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 9.7e-187 657.1 444 71.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 4.8e-186 654.8 429 72.0
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.2e-184 650.2 440 72.0
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.0e-184 649.4 436 71.3
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.3e-183 646.7 446 70.6
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 2.2e-183 646.0 436 72.9
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.5e-182 643.3 392 75.8
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 5.5e-182 641.3 427 70.3
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.2e-181 640.2 513 62.4
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.6e-181 639.8 447 71.4
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.7e-181 638.3 440 70.0
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 6.1e-181 637.9 432 71.1
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.5e-179 633.3 322 90.7
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.6e-176 623.2 449 67.0
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.4e-172 610.1 432 70.4
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 4.0e-172 608.6 326 85.0
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 8.3e-170 600.9 339 82.6
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.3e-170 600.9 423 66.9
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 5.4e-169 598.2 439 65.4
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.9e-167 592.4 438 66.7
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 5.4e-161 571.6 410 67.1
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 9.2e-161 570.9 436 64.4
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.7e-160 569.3 342 73.7
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.9e-159 565.5 291 86.9
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 4.3e-158 562.0 290 88.3
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.2e-157 560.5 289 86.9
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 4.7e-149 531.9 290 82.1
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 6.6e-143 511.5 332 67.8
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 7.3e-142 508.1 349 72.2
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.6e-141 506.9 270 86.3
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.8e-132 476.9 401 63.6
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 3.6e-125 452.6 336 59.8
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 8.4e-122 441.4 303 71.0
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 3.5e-120 436.0 285 68.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 7.4e-118 428.3 312 67.3
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.5e-115 420.6 302 68.2
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.3e-108 395.6 336 51.8
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.7e-95 351.7 318 51.9
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.9e-91 339.0 262 63.4
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 7.2e-89 332.0 332 46.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 3.3e-70 270.0 139 87.1
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.6e-64 250.0 179 65.4
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.8e-53 213.8 109 86.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 8.3e-53 212.2 120 78.3
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.1e-52 211.8 124 75.8
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-49 201.8 138 66.7
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 8.3e-45 185.7 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.3e-31 141.0 85 75.3
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.8e-31 139.4 85 74.1
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 4.4e-30 136.7 101 66.3
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 9.9e-30 135.6 80 76.2
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.4e-12 78.6 52 67.3
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 5.8e-06 56.6 127 37.0


User provided reference genes

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