Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 0.0e+00 1214.1 623 100.0
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 4.5e-219 765.0 583 70.5
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.0e-215 753.8 647 64.5
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.8e-215 753.1 529 75.0
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.5e-214 750.0 599 68.8
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.5e-214 749.2 581 68.5
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.1e-212 743.8 497 76.1
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.8e-212 743.0 508 74.8
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.1e-212 741.9 582 67.7
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.2e-210 736.1 512 74.8
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.2e-210 736.1 542 72.1
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 7.2e-209 731.1 622 63.8
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 6.1e-208 728.0 567 69.0
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 8.7e-207 724.2 616 65.1
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.1e-206 723.8 494 74.9
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 4.3e-206 721.8 612 64.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 4.8e-205 718.4 533 70.9
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.4e-204 716.8 568 68.3
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 1.8e-204 716.5 559 68.3
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 9.0e-204 714.1 594 65.0
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.9e-201 706.4 563 66.6
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.2e-200 703.7 601 64.4
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 2.1e-200 703.0 559 66.5
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 2.1e-200 703.0 483 74.7
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 2.1e-200 703.0 563 66.3
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 4.6e-200 701.8 590 65.1
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 6.1e-200 701.4 576 65.5
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 7.9e-200 701.0 601 63.6
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.8e-199 699.9 635 61.4
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 3.3e-198 695.7 551 67.2
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.3e-198 695.3 622 61.6
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 4.3e-198 695.3 567 64.0
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 5.7e-198 694.9 589 65.5
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 5.7e-198 694.9 582 64.1
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 4.8e-197 691.8 536 67.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 4.8e-197 691.8 518 70.7
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 8.2e-197 691.0 523 70.9
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-196 690.6 592 63.7
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.1e-196 690.6 536 67.0
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 1.4e-196 690.3 586 63.8
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 3.1e-196 689.1 514 68.9
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 4.1e-196 688.7 514 68.9
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.2e-195 687.2 557 67.5
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 2.0e-195 686.4 521 68.3
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 3.4e-195 685.6 573 66.7
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.4e-195 685.6 500 72.8
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 4.5e-195 685.3 633 60.3
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 4.5e-195 685.3 591 66.2
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.3e-194 683.7 495 70.7
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 2.9e-194 682.6 523 68.6
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 3.8e-194 682.2 494 69.8
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 5.0e-194 681.8 536 68.3
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 2.5e-193 679.5 518 68.1
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 2.5e-193 679.5 638 59.9
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 3.2e-193 679.1 545 65.0
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 4.2e-193 678.7 574 65.2
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 7.2e-193 677.9 587 62.0
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 9.4e-193 677.6 525 67.6
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.6e-192 676.8 644 59.0
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 1.6e-192 676.8 484 70.9
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.1e-192 676.4 541 64.9
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.1e-192 676.4 644 59.0
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.6e-190 669.5 533 65.9
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 4.4e-190 668.7 484 71.9
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 9.7e-190 667.5 707 56.2
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.4e-188 662.9 579 61.7
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 2.0e-187 659.8 531 65.5
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 4.5e-187 658.7 490 71.4
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 5.9e-187 658.3 543 65.2
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 6.5e-186 654.8 633 58.6
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 2.1e-184 649.8 630 59.0
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 8.0e-184 647.9 509 65.2
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 5.2e-183 645.2 484 69.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 5.2e-183 645.2 444 76.1
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.0e-182 643.3 657 55.1
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.6e-182 642.9 510 66.1
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 3.1e-180 636.0 515 64.3
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 9.1e-180 634.4 493 67.7
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.7e-179 632.9 567 62.8
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 2.9e-178 629.4 486 66.9
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 8.5e-178 627.9 533 62.3
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.2e-176 624.0 596 58.4
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.8e-175 620.2 637 57.8
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 3.0e-175 619.4 519 61.5
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.5e-174 617.1 573 57.6
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 2.6e-174 616.3 555 60.4
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 9.8e-174 614.4 545 63.7
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 6.3e-173 611.7 538 60.4
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 8.3e-173 611.3 568 58.5
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.7e-170 603.6 571 60.9
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 2.1e-168 596.7 393 79.1
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.7e-165 587.0 558 60.6
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 3.8e-162 575.9 408 72.5
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 5.0e-162 575.5 392 77.6
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 9.5e-161 571.2 561 57.8
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.5e-155 552.7 545 56.9
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 2.3e-154 550.1 440 70.7
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 4.4e-150 535.8 528 59.5
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 8.6e-146 521.5 625 49.4
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 9.8e-142 508.1 383 66.8
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.3e-141 507.7 564 49.5
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 3.0e-138 496.5 311 82.6
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 7.3e-137 491.9 491 55.8
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 8.1e-136 488.4 541 51.2
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 5.2e-135 485.7 293 85.0
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 2.4e-132 476.9 461 57.5
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 2.3e-122 443.7 450 55.3
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.1e-119 434.9 478 48.7
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.4e-110 403.3 341 63.3
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.1e-105 388.3 576 41.1
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.9e-105 387.5 492 46.5
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.9e-100 370.9 283 71.4
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.8e-98 364.4 363 53.4
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 6.3e-96 355.9 266 69.2
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.4e-95 354.8 487 42.9
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.3e-93 348.2 329 56.5
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.5e-92 344.0 359 54.6
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-89 334.7 327 59.3
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 3.1e-87 327.0 561 36.4
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 2.0e-86 324.3 327 55.0
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 4.5e-86 323.2 326 54.3
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 2.2e-85 320.9 196 84.7
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 4.2e-84 316.6 260 64.6
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.3e-79 299.7 334 53.0
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 3.8e-77 293.5 336 51.5
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.1e-76 292.0 194 77.8
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.3e-74 284.3 191 74.3
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-66 258.5 330 46.7
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 7.5e-65 252.7 178 71.9
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 2.2e-61 241.1 155 82.6
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.5e-60 237.7 227 57.7
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 8.0e-59 232.6 229 58.1
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 4.0e-58 230.3 502 32.5
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.5e-54 217.2 265 46.4
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.0e-51 206.1 244 48.4
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-50 205.3 243 48.1
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 6.8e-50 203.0 147 73.5
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.1e-47 195.7 156 71.2
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.7e-46 191.0 126 77.8
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.5e-41 175.3 117 74.4
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.5e-36 157.9 239 41.0
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.6e-36 156.8 233 42.1
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 8.0e-35 152.9 149 61.1
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 5.4e-31 140.2 168 45.8
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 3.0e-29 134.4 149 48.3
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 3.6e-27 127.5 253 36.8
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 4.7e-27 127.1 93 65.6
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 5.4e-23 113.6 199 39.7
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 8.6e-21 106.3 152 41.4
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.2e-19 102.4 136 39.0
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 4.0e-18 97.4 52 92.3
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 6.8e-18 96.7 57 80.7
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.5e-17 95.5 72 63.9
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.9e-16 91.3 59 76.3
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 3.8e-16 90.9 141 41.8
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.9e-15 88.6 123 45.5
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 4.6e-14 84.0 74 58.1
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 6.6e-13 80.1 51 74.5
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 4.3e-12 77.4 128 35.9
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-12 77.4 81 53.1
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.6e-12 76.3 70 48.6
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.6e-11 75.5 53 64.2
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 6.2e-11 73.6 48 68.8
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 2.4e-10 71.6 54 61.1
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 4.0e-10 70.9 45 60.0
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 4.0e-10 70.9 45 60.0
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 9.0e-10 69.7 59 67.8
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 5.8e-09 67.0 52 63.5
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 1.1e-07 62.8 51 56.9
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.4e-07 62.4 57 45.6
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 6.0e-06 57.0 39 71.8


User provided reference genes

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