Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 0.0e+00 1234.9 631 100.0
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.4e-273 946.0 621 78.4
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 5.5e-257 891.0 630 72.5
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.5e-251 872.8 639 71.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.4e-249 866.3 644 71.0
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.4e-247 859.8 648 69.6
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.4e-247 859.8 637 70.0
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 8.8e-247 857.1 635 69.9
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.3e-245 853.2 636 70.6
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 2.8e-245 852.0 635 69.3
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 8.2e-245 850.5 637 69.5
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.4e-244 849.0 638 69.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 6.9e-244 847.4 620 69.7
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.3e-242 843.2 639 69.5
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 6.5e-242 840.9 645 68.4
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 5.5e-241 837.8 640 69.4
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 5.5e-241 837.8 635 68.7
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 5.7e-238 827.8 621 67.8
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.3e-237 826.6 641 68.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 7.0e-236 820.8 635 67.4
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.2e-235 820.1 634 67.7
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.0e-234 817.0 656 66.2
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.4e-233 813.1 638 66.6
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 9.4e-233 810.4 643 66.3
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.3e-231 805.8 639 66.4
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 6.7e-231 804.3 660 65.6
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.8e-231 803.9 643 66.1
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.1e-230 803.5 635 66.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 7.4e-230 800.8 630 65.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 7.4e-230 800.8 646 64.9
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.6e-227 792.3 645 65.7
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.3e-226 790.0 637 64.5
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.2e-226 789.3 628 66.1
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 5.0e-226 788.1 639 64.8
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.5e-225 786.6 636 65.3
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 4.2e-225 785.0 648 64.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.2e-224 783.5 601 68.1
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.8e-223 779.6 635 66.1
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 5.2e-223 778.1 641 64.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 6.7e-223 777.7 642 63.4
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 8.8e-223 777.3 628 64.8
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 8.8e-223 777.3 634 64.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.5e-222 776.5 640 63.9
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.0e-222 776.2 631 65.3
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.6e-222 775.8 622 65.1
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 4.4e-222 775.0 639 64.3
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 4.4e-222 775.0 652 61.8
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.4e-222 775.0 634 65.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.5e-222 774.2 621 64.6
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.2e-221 772.7 622 65.0
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 2.8e-221 772.3 634 65.6
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 4.8e-221 771.5 635 64.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 6.3e-221 771.2 630 65.4
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 8.2e-221 770.8 637 65.6
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.8e-220 769.6 636 63.8
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 2.4e-220 769.2 642 63.6
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 4.1e-220 768.5 639 63.2
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 4.1e-220 768.5 639 63.2
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 4.1e-220 768.5 636 63.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.1e-220 768.5 637 63.4
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.2e-219 766.9 637 63.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.0e-218 763.8 636 62.9
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.9e-217 759.6 642 62.5
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.5e-217 759.2 637 62.2
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 7.2e-217 757.7 637 63.4
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 6.1e-216 754.6 659 61.0
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.4e-215 753.4 646 63.3
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 8.8e-215 750.7 629 61.4
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.2e-214 750.4 628 62.7
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.4e-214 748.8 675 61.3
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 5.4e-212 741.5 627 63.0
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 2.3e-210 736.1 647 60.9
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.9e-210 735.7 644 59.9
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 5.0e-210 734.9 638 60.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 9.5e-209 730.7 640 60.8
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.8e-208 729.2 605 64.1
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 4.7e-208 728.4 627 61.1
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.0e-206 723.0 634 61.4
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-204 716.8 642 60.1
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.0e-199 700.7 580 64.0
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.5e-198 694.5 566 65.0
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.1e-192 676.4 529 66.9
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.2e-190 670.6 475 70.7
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 4.4e-190 668.7 647 56.7
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 4.4e-190 668.7 659 55.4
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.1e-188 664.1 641 58.5
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.3e-186 656.4 526 64.1
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.1e-180 637.5 490 67.3
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.6e-176 622.5 679 52.4
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 5.4e-172 608.6 532 63.3
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.8e-167 593.6 650 52.0
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.4e-167 593.2 644 51.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.1e-164 584.3 488 61.9
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 5.4e-164 582.0 698 48.3
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 3.0e-162 576.2 491 64.4
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-160 570.5 592 53.7
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.1e-155 553.5 535 55.9
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.8e-143 513.8 640 44.8
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 5.5e-132 475.7 442 60.6
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.3e-125 454.5 507 53.1
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 6.3e-120 435.6 748 37.6
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.5e-118 429.9 684 40.4
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 6.5e-109 399.1 272 71.0
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.3e-106 390.6 387 59.9
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 8.8e-106 388.7 289 70.6
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.5e-102 376.7 578 41.2
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.2e-100 370.2 335 61.8
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.4e-95 354.8 291 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.0e-94 350.9 635 36.7
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 2.3e-90 337.4 324 57.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.5e-81 308.1 288 58.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-79 301.2 434 49.3
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 6.6e-77 292.7 489 39.3
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.7e-72 278.1 331 48.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 8.3e-64 249.2 205 68.3
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 5.4e-63 246.5 177 71.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.7e-62 244.2 382 44.0
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-58 231.9 381 40.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 3.8e-56 223.8 200 60.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.4e-55 219.9 149 71.1
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.7e-54 217.6 158 69.6
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 4.6e-38 163.7 116 63.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.3e-35 155.6 674 28.0
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.6e-35 155.2 237 37.6
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 4.0e-34 150.6 177 48.6
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.0e-17 95.1 92 53.3
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 5.9e-17 93.6 125 45.6
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.3e-16 92.4 111 47.7
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 6.5e-16 90.1 160 40.0
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.9e-15 88.6 59 74.6
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 7.9e-14 83.2 111 44.1
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.1e-12 79.3 55 63.6
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 5.7e-12 77.0 99 47.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.8e-11 74.7 55 65.5
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.4e-10 72.4 60 63.3
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.7e-08 65.5 60 58.3
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 5.0e-08 63.9 105 38.1


User provided reference genes

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