Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.4e-298 1029.2 709 100.0
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.5e-202 710.3 704 65.2
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.5e-202 710.3 704 65.2
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.3e-187 659.8 688 62.4
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.1e-186 657.5 721 65.7
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.9e-184 648.3 684 61.0
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 5.9e-183 645.2 690 65.4
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.2e-182 643.3 668 61.1
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 2.2e-182 643.3 700 62.1
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 6.7e-179 631.7 692 64.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 7.4e-178 628.2 669 60.7
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.7e-177 627.1 735 60.8
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 6.3e-177 625.2 726 57.6
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.2e-175 620.9 664 59.9
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.5e-175 620.5 659 58.1
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.9e-175 618.6 703 60.7
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 7.7e-175 618.2 697 61.0
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.7e-174 617.1 699 62.2
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 6.1e-172 608.6 668 58.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.7e-169 599.4 719 62.9
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.1e-168 597.8 676 65.1
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 5.3e-168 595.5 681 55.2
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.0e-167 593.6 728 60.6
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 7.7e-167 591.7 709 59.4
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 8.5e-166 588.2 706 62.3
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.9e-165 587.0 660 57.9
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 9.4e-165 584.7 686 62.5
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.8e-163 580.5 694 58.5
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.3e-163 580.1 743 60.4
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 8.8e-163 578.2 741 57.8
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.5e-162 577.4 621 66.7
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 4.4e-162 575.9 731 59.1
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 7.5e-162 575.1 660 61.1
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.1e-160 569.7 689 56.7
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 4.1e-160 569.3 675 61.8
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 5.9e-159 565.5 674 55.0
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.7e-158 563.9 677 54.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.7e-156 556.6 660 61.2
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 3.6e-156 556.2 736 56.7
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 4.7e-156 555.8 706 52.7
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 2.6e-154 550.1 715 53.8
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 4.4e-154 549.3 722 57.5
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 7.5e-154 548.5 674 62.0
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 6.3e-153 545.4 718 57.1
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 8.3e-153 545.0 665 58.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.7e-151 540.0 660 61.5
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 4.5e-151 539.3 734 51.8
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 5.9e-151 538.9 622 65.8
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 7.7e-151 538.5 659 61.6
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.3e-150 537.7 716 53.2
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.7e-150 537.3 685 59.1
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.5e-149 534.3 669 60.2
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 4.2e-149 532.7 709 60.1
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.5e-149 532.3 700 56.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.8e-148 530.0 715 62.7
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 8.0e-148 528.5 727 54.5
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.0e-147 528.1 727 52.4
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.8e-147 527.3 630 63.2
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 3.0e-147 526.6 712 62.4
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 3.7e-145 519.6 659 58.4
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.4e-144 517.7 717 55.1
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 3.2e-144 516.5 532 56.4
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.0e-142 509.2 717 56.5
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.3e-141 506.1 702 56.4
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 9.5e-141 505.0 692 53.8
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.2e-140 504.6 731 57.0
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 6.1e-140 502.3 684 56.7
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 6.8e-139 498.8 781 49.9
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-136 491.5 749 52.1
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.4e-136 491.1 736 56.2
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 3.2e-136 490.0 520 55.8
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.5e-133 481.1 662 57.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.8e-132 476.9 549 62.5
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 6.8e-131 472.2 723 49.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.5e-130 471.1 706 49.4
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.0e-130 470.7 770 56.9
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.2e-129 467.2 721 48.7
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.9e-129 466.8 701 55.3
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 4.9e-129 466.1 578 55.4
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.4e-123 448.0 717 54.7
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 6.8e-123 445.7 519 56.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 4.4e-122 443.0 697 44.5
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 2.2e-121 440.7 746 58.8
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.1e-120 438.3 513 62.6
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 7.1e-120 435.6 731 56.0
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 2.1e-119 434.1 731 56.8
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 6.0e-119 432.6 725 55.9
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 4.3e-117 426.4 296 72.6
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.1e-115 421.8 700 55.6
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 3.1e-115 420.2 585 47.9
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 6.8e-115 419.1 707 51.5
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 6.8e-115 419.1 721 55.6
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 6.8e-115 419.1 731 55.0
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.5e-114 417.9 730 54.9
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.5e-114 417.9 526 53.0
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.0e-114 417.5 686 48.8
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.6e-111 406.4 450 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.9e-105 387.1 687 45.9
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.3e-99 366.3 359 66.0
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 4.9e-97 359.8 685 48.0
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.9e-96 357.8 604 42.5
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.2e-96 356.7 689 45.1
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 5.1e-94 349.7 687 47.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.9e-93 347.8 659 48.4
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.2e-92 342.8 594 41.9
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.2e-90 338.6 408 58.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 3.2e-80 303.9 553 39.1
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 3.5e-79 300.4 319 70.8
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.6e-79 300.1 481 48.2
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.4e-67 261.2 223 63.2
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.0e-65 255.8 779 33.0
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.4e-61 240.4 195 60.5
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.8e-60 237.7 251 61.0
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 6.5e-57 226.5 196 59.7
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 8.5e-57 226.1 531 35.4
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 3.3e-53 214.2 740 30.9
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.5e-50 204.1 256 60.5
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.7e-49 201.8 314 50.3
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 4.7e-47 193.7 354 37.6
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 4.8e-44 183.7 241 44.8
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.8e-43 181.8 202 50.0
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 5.4e-43 180.3 426 35.0
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 8.8e-38 162.9 262 48.9
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.0e-33 149.4 116 68.1
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.5e-29 135.6 212 44.8
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 2.6e-29 134.8 287 46.0
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.4e-29 134.0 100 72.0
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.3e-28 132.5 136 59.6
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 3.7e-28 131.0 111 57.7
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.1e-23 115.2 179 53.1
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 4.7e-23 114.0 99 54.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 2.6e-21 108.2 163 50.3
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-19 102.8 73 68.5
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-19 102.4 107 49.5
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-19 102.1 79 59.5
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 4.6e-18 97.4 89 51.7
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 7.8e-18 96.7 181 35.9
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.0e-17 96.3 162 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.2e-15 89.4 290 34.1
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 3.6e-15 87.8 77 61.0
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.3e-14 85.1 69 68.1
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.5e-13 82.4 85 55.3
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 8.3e-12 76.6 60 65.0
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 8.3e-12 76.6 62 61.3
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-11 75.9 185 34.1
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 3.3e-08 64.7 72 55.6
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.3e-08 64.7 48 60.4
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 7.3e-08 63.5 72 54.2
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.6e-07 61.2 60 50.0
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 8.1e-07 60.1 60 48.3
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.3e-06 58.5 77 41.6
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.3e-06 58.5 77 41.6
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 6.8e-06 57.0 69 44.9


User provided reference genes

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