Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 0.0e+00 1662.1 869 100.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.2e-161 574.7 909 44.3
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.2e-142 511.5 921 41.0
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.2e-134 485.0 882 41.7
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.6e-134 484.6 864 38.9
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.9e-127 461.1 868 39.4
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 2.4e-125 454.1 871 39.2
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 7.6e-124 449.1 878 41.6
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.1e-122 445.3 869 41.0
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.0e-120 437.2 870 37.8
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.1e-117 428.7 870 39.8
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 4.0e-117 426.8 864 37.3
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.3e-117 426.4 872 39.8
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 4.4e-116 423.3 870 37.1
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 2.7e-113 414.1 898 37.5
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 7.9e-113 412.5 889 35.9
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 6.6e-112 409.5 874 37.4
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.1e-110 404.4 867 38.2
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.4e-108 397.1 887 35.3
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 4.2e-106 390.2 932 35.8
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.6e-105 386.7 881 34.8
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.6e-105 386.7 881 34.8
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 9.6e-103 379.0 882 34.5
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 3.7e-102 377.1 839 37.7
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.4e-101 375.2 958 33.7
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.4e-101 375.2 870 35.2
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 5.8e-100 369.8 869 34.4
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 7.6e-100 369.4 870 34.6
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.0e-99 369.0 865 36.0
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.8e-99 367.1 786 38.8
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 8.4e-99 365.9 786 38.7
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 7.1e-98 362.8 871 34.0
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.3e-96 358.6 786 38.0
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 7.6e-92 342.8 870 34.6
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 7.4e-87 326.2 792 37.2
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 9.7e-87 325.9 861 34.4
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 4.8e-86 323.6 889 32.3
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 7.7e-84 316.2 874 32.7
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.7e-83 315.1 882 33.3
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 2.9e-83 314.3 822 35.6
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.9e-82 311.6 866 31.4
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 3.2e-82 310.8 414 48.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 9.4e-82 309.3 865 31.1
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 9.4e-82 309.3 863 32.1
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.6e-81 308.5 915 31.4
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.4e-80 305.4 962 30.2
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.8e-80 305.1 475 41.9
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 5.1e-80 303.5 871 31.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.5e-79 301.2 890 31.3
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 7.4e-79 299.7 883 31.4
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 8.2e-78 296.2 785 33.8
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.4e-77 295.4 878 31.9
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.8e-77 295.0 884 32.9
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 5.3e-77 293.5 557 39.5
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.5e-76 292.0 872 32.2
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.5e-76 292.0 865 33.1
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 3.4e-76 290.8 875 32.2
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 5.9e-76 290.0 876 32.3
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.7e-75 288.5 865 30.9
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.0e-75 287.0 865 32.0
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 2.5e-74 284.6 832 32.5
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 3.2e-74 284.3 870 30.5
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 5.5e-74 283.5 868 31.1
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 5.5e-74 283.5 878 31.4
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 3.9e-72 277.3 898 30.7
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 5.1e-72 276.9 887 30.8
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 3.3e-71 274.2 876 32.4
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 3.7e-70 270.8 869 31.8
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-69 268.9 831 29.8
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.4e-69 268.1 967 29.7
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 1.6e-68 265.4 880 30.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.6e-68 265.4 898 30.7
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 7.7e-68 263.1 563 35.3
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 3.2e-66 257.7 865 31.3
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 1.2e-65 255.8 784 31.0
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.2e-65 255.8 966 28.5
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 4.4e-63 247.3 874 30.0
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.7e-62 245.4 864 29.9
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 3.1e-61 241.1 827 28.9
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 7.0e-61 240.0 885 29.8
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 9.1e-61 239.6 879 30.0
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.7e-60 238.0 873 29.7
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.5e-60 237.3 903 29.8
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 2.2e-59 235.0 617 34.4
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 1.5e-58 232.3 825 29.0
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 2.5e-58 231.5 981 28.5
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 3.2e-58 231.1 876 28.7
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 7.2e-58 229.9 891 28.6
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 9.4e-58 229.6 825 28.8
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.2e-57 229.2 430 38.1
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 6.1e-57 226.9 872 27.8
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 6.1e-57 226.9 729 31.8
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.4e-56 225.7 868 28.7
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 3.0e-56 224.6 865 28.7
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 3.0e-56 224.6 858 28.0
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 4.0e-56 224.2 877 28.4
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.8e-56 223.4 872 29.1
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 2.0e-55 221.9 870 28.5
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 4.4e-55 220.7 992 28.8
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 5.7e-55 220.3 791 30.0
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.7e-54 218.8 866 28.1
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.7e-51 208.8 703 30.9
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 5.0e-51 207.2 883 29.9
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.2e-50 204.1 888 28.2
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 3.6e-49 201.1 882 28.2
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 3.6e-49 201.1 875 28.6
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 4.0e-48 197.6 869 28.3
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 2.0e-47 195.3 550 31.5
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 3.4e-47 194.5 881 27.9
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.1e-45 189.5 879 26.1
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 3.1e-45 188.0 824 26.3
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 3.5e-44 184.5 827 27.6
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 5.0e-43 180.6 852 27.6
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 1.5e-42 179.1 878 27.1
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.6e-41 175.6 408 39.2
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 7.5e-39 166.8 890 26.5
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.1e-37 162.9 859 26.1
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 7.0e-37 160.2 605 29.6
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 3.3e-34 151.4 911 25.8
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 6.2e-33 147.1 162 52.5
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.1e-32 144.8 336 36.3
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 4.0e-32 144.4 803 25.7
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.6e-31 141.7 405 30.4
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.4e-29 136.0 875 25.8
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.6e-28 131.0 126 54.8
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.7e-27 129.0 136 55.1
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.3e-27 128.6 654 25.8
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.5e-26 125.9 737 24.4
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 9.5e-26 123.2 176 43.8
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 3.6e-25 121.3 148 48.0
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 1.4e-21 109.4 121 50.4
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 2.7e-20 105.1 134 48.5
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 9.5e-18 96.7 134 44.0
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.2e-17 96.3 119 46.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.2e-17 96.3 145 43.4
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.8e-16 92.4 141 41.8
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 3.1e-16 91.7 82 56.1
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 3.1e-16 91.7 140 39.3
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.8e-15 87.4 242 32.2
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.4e-13 82.8 91 50.5
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 7.1e-13 80.5 226 31.0
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 2.1e-12 79.0 113 42.5
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 7.8e-12 77.0 50 70.0
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 5.8e-07 60.8 48 58.3
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.8e-07 60.8 289 26.0


User provided reference genes

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