Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 2568.9 1330 100.0
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1679.1 1341 66.3
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1427.5 1348 58.7
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1404.8 1315 58.6
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1389.4 1344 58.0
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1377.8 1346 57.4
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1376.7 1369 56.4
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1370.9 1343 57.4
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1370.9 1354 56.2
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1368.6 1319 57.4
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1337.8 1347 55.6
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1330.1 1343 55.7
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1328.5 1338 55.6
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1328.5 1341 55.6
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1318.5 1314 56.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1297.7 1353 54.0
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1292.3 1316 54.7
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1278.1 1338 53.8
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1275.8 1335 53.7
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1272.7 1351 53.9
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1269.2 1342 52.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1264.6 1313 53.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1264.2 1266 55.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1253.0 1316 52.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1216.1 1314 52.4
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1187.6 1354 51.4
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1174.1 1356 51.0
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1172.9 1317 50.0
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1168.7 1354 50.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1166.8 1354 50.7
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1154.4 1317 51.6
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1153.3 1347 49.1
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1146.0 1342 50.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1132.9 1174 53.7
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1132.1 1256 51.8
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1129.4 1322 48.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1126.7 1346 49.1
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1124.0 1303 49.0
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1122.8 1468 45.4
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1103.2 1352 48.7
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1085.1 1329 45.9
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1080.5 1322 46.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.2e-308 1062.8 1322 46.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.6e-306 1056.6 1325 46.3
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 6.0e-306 1054.7 1330 45.4
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 6.0e-306 1054.7 1315 45.6
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.8e-303 1045.8 1298 46.6
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 4.8e-303 1045.0 1314 46.3
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.2e-298 1030.4 1329 45.1
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 2.1e-298 1029.6 1350 45.6
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.5e-296 1023.5 1350 45.6
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.9e-296 1023.1 1246 47.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.3e-295 1020.4 1319 46.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 4.8e-295 1018.5 1281 46.3
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 4.5e-293 1011.9 1325 45.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 4.2e-291 1005.4 1300 45.7
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 7.4e-288 994.6 1335 45.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 6.3e-287 991.5 1304 45.4
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 3.1e-286 989.2 1301 46.5
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 1.2e-285 987.3 1328 45.0
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 2.6e-285 986.1 1302 46.1
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 5.5e-283 978.4 1311 44.9
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 7.2e-283 978.0 1212 46.9
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 7.2e-283 978.0 1305 44.8
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 7.9e-282 974.5 1334 44.5
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.6e-280 969.5 1304 45.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 4.2e-275 952.2 1336 43.9
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.5e-267 926.4 1300 43.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 2.7e-266 922.9 1317 43.9
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 6.1e-266 921.8 1342 42.8
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 2.7e-261 906.4 1345 42.3
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.2e-252 876.7 1331 42.0
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.8e-249 867.1 1313 41.4
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 2.6e-248 863.2 1343 42.1
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 5.0e-244 849.0 1296 40.7
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.6e-224 783.5 1333 38.7
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 6.4e-223 778.9 1083 44.0
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 3.2e-222 776.5 1343 39.3
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.7e-220 770.8 1317 38.9
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.3e-217 760.4 1328 38.4
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.3e-203 712.2 1316 38.0
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.6e-202 711.1 690 58.7
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.4e-201 707.2 1338 37.4
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 6.9e-201 705.7 700 57.3
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.1e-198 698.4 1095 39.1
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.3e-194 684.9 1282 37.0
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.2e-192 678.3 1243 37.5
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 8.7e-188 662.1 1313 35.4
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.3e-183 648.3 1133 39.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.0e-180 638.6 1259 36.3
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 8.7e-180 635.6 1302 34.6
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 9.7e-179 632.1 698 53.3
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 7.6e-176 622.5 703 52.8
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.0e-175 622.1 1302 35.3
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 3.7e-170 603.6 648 50.6
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.0e-167 595.5 637 52.1
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.8e-151 540.4 568 52.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 9.1e-145 519.2 715 45.0
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 9.5e-134 482.6 787 41.4
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.8e-129 468.4 836 38.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 4.5e-128 463.8 715 42.1
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.3e-118 431.0 782 36.3
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.8e-107 393.7 910 34.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.7e-101 374.0 678 39.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 3.8e-98 364.4 350 55.1
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 5.1e-95 354.0 684 37.1
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.3e-90 339.3 846 31.0
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.0e-79 303.1 1015 28.4
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.8e-79 302.4 583 32.9
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.8e-67 260.8 892 28.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.3e-63 249.6 963 25.8
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.6e-48 198.4 594 32.2
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 8.2e-45 187.2 293 38.6
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.7e-40 172.2 279 38.0
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.7e-37 162.9 568 30.8
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 2.6e-35 155.6 266 34.6
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.5e-25 122.5 229 38.9
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 4.2e-25 121.7 505 29.7
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.4e-23 116.7 557 25.0
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 6.8e-23 114.4 572 27.6
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.0e-22 112.8 571 30.3
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 2.6e-22 112.5 198 38.9
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 7.5e-22 110.9 572 27.3
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 7.5e-22 110.9 116 53.4
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.1e-20 107.1 582 26.6
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.1e-20 105.1 495 26.1
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.2e-19 103.6 250 33.6
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 5.9e-19 101.3 572 27.1
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.7e-18 99.8 484 29.1
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.7e-18 99.8 484 29.1
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.3e-18 99.4 570 26.1
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 3.8e-18 98.6 148 35.8
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 6.6e-18 97.8 466 24.9
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 1.5e-17 96.7 183 35.0
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 1.0e-15 90.5 577 29.6
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.4e-14 85.1 289 33.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.4e-14 85.1 289 33.9
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 4.1e-12 78.6 299 24.4
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.3e-10 72.8 92 43.5
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 8.6e-10 70.9 104 35.6
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 2.0e-06 59.7 79 49.4
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 9.8e-06 57.4 93 36.6


User provided reference genes

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