Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 4525.7 2471 100.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2635.9 2508 64.2
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2590.8 2504 63.8
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2588.9 2523 63.4
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2571.6 2507 63.5
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2562.7 2509 63.3
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2548.9 2534 61.5
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2476.8 2508 61.4
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2468.3 2505 61.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2467.2 2536 60.4
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2464.1 2510 60.9
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2463.7 2506 61.9
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2457.2 2505 60.9
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2454.1 2540 60.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2384.0 2505 59.3
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2364.0 2502 58.9
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2364.0 2509 59.6
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2357.8 2519 59.1
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2348.5 2569 59.0
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2345.1 2510 60.0
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2343.2 2508 59.8
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2340.1 2510 59.8
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2337.8 2528 58.5
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2337.0 2575 58.7
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2328.9 2456 59.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2320.8 2567 58.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2318.1 2575 58.4
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2298.9 2505 59.2
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2295.8 2498 58.4
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2272.7 2498 58.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2246.1 2504 58.1
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2204.9 2552 55.3
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2201.8 2501 56.8
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2186.8 2518 56.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2179.4 2515 57.4
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2157.9 2503 57.2
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2131.3 2498 57.0
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2122.8 2526 54.9
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2097.4 2555 54.3
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2093.9 2540 55.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 2069.7 2483 54.7
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2063.9 2533 55.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 2058.9 2502 54.9
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 2045.4 2499 54.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 2022.7 2539 52.9
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 2018.8 2499 54.7
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1998.8 2498 54.1
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1987.6 2513 54.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1979.5 2197 57.4
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1978.4 2550 54.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1957.2 2501 53.1
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1955.6 2552 52.8
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1936.8 2027 61.1
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1935.2 2576 50.8
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1932.1 2313 54.7
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1931.8 2514 52.7
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1915.6 2511 52.2
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1910.6 2510 52.4
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1905.2 2520 53.1
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1889.0 2637 50.5
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1887.1 2491 51.3
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1886.3 2543 52.6
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1883.2 2515 51.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1880.1 2505 52.4
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1880.1 2528 51.7
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1870.1 2514 52.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1866.3 2498 52.6
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1855.5 2510 51.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1844.7 2546 49.9
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1844.7 2498 52.0
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1826.2 2512 51.1
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1811.6 2511 49.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1798.1 1872 60.1
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1769.6 2502 50.9
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1769.6 2393 51.2
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1751.1 2504 50.6
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1727.6 2446 48.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1693.7 2386 49.5
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1678.7 2506 49.8
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1676.0 2529 49.3
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1645.6 2508 48.4
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1582.0 2513 47.2
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1577.8 2494 47.1
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1542.7 2497 46.1
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1493.4 2548 43.3
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1484.5 2622 42.4
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1458.7 2623 43.1
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1453.3 2504 46.2
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1439.1 2505 45.4
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1409.8 2556 42.4
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1398.3 2498 44.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1389.4 2438 45.2
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1369.8 2554 43.8
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1357.0 2498 44.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1345.5 2440 43.9
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1300.0 2489 42.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1289.2 2604 41.8
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 0.0e+00 1277.3 1094 70.5
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1256.1 2418 41.1
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1246.5 2410 42.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1225.7 1704 51.8
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1208.0 1280 57.9
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1183.3 2534 41.3
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1099.7 1747 44.8
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 6.8e-311 1072.0 969 64.3
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.5e-289 1001.1 2435 39.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 5.8e-278 962.6 1031 60.7
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 5.6e-273 946.0 2442 39.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 5.6e-273 946.0 2442 39.0
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.5e-270 937.9 2515 37.9
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 6.4e-269 932.6 2480 38.6
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.1e-266 922.9 2438 38.5
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.4e-263 914.8 2439 38.5
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 3.7e-248 863.6 2736 35.5
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.2e-236 823.9 711 66.9
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 7.0e-215 753.1 947 56.5
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.7e-205 721.8 975 48.8
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.8e-191 675.2 1951 36.7
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 7.0e-191 673.3 2574 31.7
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 7.5e-185 653.3 570 68.9
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.3e-184 652.5 1828 33.4
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 5.4e-159 567.4 1816 35.1
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 4.6e-142 511.1 446 63.5
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 5.6e-140 504.2 783 45.2
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 2.3e-133 482.3 1413 36.4
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 9.6e-132 476.9 674 51.9
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 4.8e-131 474.6 514 54.3
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 5.8e-129 467.6 934 40.1
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.0e-109 403.7 1247 32.9
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.6e-94 352.1 2927 28.7
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-86 327.0 989 33.8
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.3e-85 322.8 2791 28.7
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 5.0e-80 305.1 298 56.7
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.1e-61 244.2 2802 27.5
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.2e-60 240.7 1030 32.5
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 5.8e-60 238.4 566 36.7
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.9e-59 236.1 223 62.3
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 6.6e-56 224.9 501 37.7
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.3e-55 221.5 2778 27.2
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 3.6e-54 219.2 258 54.3
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 2.6e-52 213.0 258 53.5
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.2e-51 209.9 445 38.0
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.5e-47 197.2 311 43.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.4e-42 179.9 564 33.3
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 3.5e-41 176.0 213 52.1
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.0e-41 175.3 2420 26.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.7e-40 171.4 164 61.6
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.4e-27 128.6 351 33.6
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.0e-24 121.3 2176 26.4
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 6.2e-22 112.1 316 32.0
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 3.8e-19 102.8 125 51.2
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.7e-17 96.7 221 38.0
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.8e-16 94.0 158 44.9
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.1e-15 91.3 63 68.3
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 3.3e-15 89.7 56 75.0
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.6e-14 87.4 123 48.0
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.7e-11 77.4 78 60.3
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 8.5e-11 75.1 186 36.0
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 2.5e-10 73.6 84 50.0
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.0e-08 68.2 133 37.6
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 5.7e-07 62.4 97 47.4
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.6e-06 60.8 146 30.8


User provided reference genes

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