Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 4.9e-115 417.9 229 100.0
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 2.3e-56 223.0 233 60.1
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 1.1e-42 177.6 237 48.1
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 5.8e-39 165.2 232 47.8
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 2.9e-38 162.9 232 47.4
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 4.9e-38 162.2 236 47.0
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 2.0e-36 156.8 229 46.7
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 3.9e-35 152.5 225 48.0
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 6.6e-35 151.8 229 45.4
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.5e-34 150.6 226 47.8
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 2.5e-34 149.8 225 46.2
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 5.6e-34 148.7 228 43.4
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 9.5e-34 147.9 237 46.4
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 1.6e-33 147.1 238 45.4
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.4e-32 144.1 225 44.9
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 8.9e-32 141.4 225 44.9
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.6e-31 139.8 225 44.4
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.7e-30 137.1 227 41.4
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 3.7e-30 136.0 233 40.8
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 1.6e-28 130.6 231 39.4
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.6e-28 130.6 214 46.3
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.6e-28 130.6 214 46.3
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 1.6e-28 130.6 237 41.4
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 2.1e-28 130.2 235 40.4
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 2.7e-28 129.8 233 39.9
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 6.0e-28 128.6 230 42.2
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 3.0e-27 126.3 229 44.5
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 8.6e-27 124.8 232 41.8
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.1e-26 124.4 217 41.5
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 1.9e-26 123.6 214 43.9
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 5.6e-26 122.1 225 41.3
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 4.7e-25 119.0 225 41.3
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 4.7e-25 119.0 221 41.6
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 1.8e-24 117.1 239 38.1
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 2.3e-24 116.7 225 40.9
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 2.3e-24 116.7 225 41.3
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 1.2e-23 114.4 225 37.8
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 1.5e-23 114.0 217 37.8
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 2.0e-23 113.6 227 39.6
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 2.0e-23 113.6 227 38.3
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 2.0e-23 113.6 221 39.8
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.6e-23 113.2 217 36.4
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 4.4e-23 112.5 239 36.8
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 7.6e-23 111.7 229 38.0
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 7.6e-23 111.7 228 36.0
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.7e-22 110.5 223 38.1
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 2.2e-22 110.2 231 38.1
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 2.2e-22 110.2 218 37.6
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 2.9e-22 109.8 227 34.8
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 6.4e-22 108.6 222 34.7
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 1.9e-21 107.1 222 36.5
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 7.1e-21 105.1 229 38.4
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 7.1e-21 105.1 144 48.6
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 9.2e-21 104.8 227 33.5
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 1.6e-20 104.0 222 37.8
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 2.7e-20 103.2 222 37.4
Dinv38775 Davidia involucrata HOM05D000630 ORTHO05D000365 6.0e-20 102.1 201 38.8
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 6.0e-20 102.1 220 39.5
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.3e-19 100.9 220 39.1
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 1.3e-19 100.9 117 51.3
Glyma.05G023400 Glycine max HOM05D002953 ORTHO05D003249 1.7e-19 100.5 231 37.2
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 2.3e-19 100.1 225 37.8
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 1.1e-18 97.8 219 35.2
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.1e-18 97.8 223 36.3
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 1.5e-18 97.4 222 35.6
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 2.5e-18 96.7 224 33.9
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 3.3e-18 96.3 215 37.7
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 9.6e-18 94.7 224 33.5
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.2e-17 94.4 138 41.3
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.2e-17 94.4 223 37.7
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.2e-17 94.4 117 50.4
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.6e-17 94.0 262 32.1
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 2.8e-17 93.2 156 39.7
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 4.7e-17 92.4 223 35.4
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 8.1e-17 91.7 217 35.5
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 8.1e-17 91.7 250 33.2
Lsat_1_v5_gn_4_110061 Lactuca sativa HOM05D002953 ORTHO05D003249 1.1e-16 91.3 101 50.5
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.1e-16 91.3 260 32.7
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 1.4e-16 90.9 222 36.0
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 2.4e-16 90.1 225 36.4
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 8.9e-16 88.2 267 33.3
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 1.5e-15 87.4 228 36.4
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 2.6e-15 86.7 231 32.5
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 4.4e-15 85.9 263 31.2
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 5.8e-15 85.5 156 41.0
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 5.8e-15 85.5 171 38.6
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 7.6e-15 85.1 282 30.5
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.3e-14 84.3 228 31.6
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.7e-14 84.0 270 31.9
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 2.9e-14 83.2 249 36.1
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 3.8e-14 82.8 231 33.8
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 4.9e-14 82.4 254 30.7
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 8.4e-14 81.6 217 33.2
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 1.1e-13 81.3 261 33.7
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.4e-13 80.9 135 40.7
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 1.9e-13 80.5 271 32.1
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 1.9e-13 80.5 274 31.8
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 3.2e-13 79.7 271 32.1
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 7.1e-13 78.6 185 34.1
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 9.3e-13 78.2 146 39.7
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 9.3e-13 78.2 254 30.3
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.6e-12 77.4 281 28.5
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 1.6e-12 77.4 282 29.4
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 2.1e-12 77.0 255 30.2
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 2.1e-12 77.0 110 43.6
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 2.7e-12 76.6 144 38.2
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 2.7e-12 76.6 249 32.5
BcaC06g33164 Brassica carinata HOM05D002953 ORTHO05D003249 2.7e-12 76.6 226 32.7
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 3.5e-12 76.3 271 31.4
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 4.6e-12 75.9 106 40.6
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 7.8e-12 75.1 116 42.2
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 7.8e-12 75.1 116 42.2
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 7.8e-12 75.1 153 35.9
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 1.0e-11 74.7 244 31.6
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.0e-11 74.7 116 42.2
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.0e-11 74.7 286 30.8
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.0e-11 74.7 228 32.9
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.3e-11 74.3 209 36.4
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 1.3e-11 74.3 124 37.1
TPR.G12280 Trifolium pratense HOM05D002953 ORTHO05D003249 1.7e-11 73.9 159 37.7
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 1.7e-11 73.9 173 32.9
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 2.3e-11 73.6 226 33.6
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.6e-11 72.0 264 30.3
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 6.6e-11 72.0 163 33.7
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 1.1e-10 71.2 231 30.7
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.1e-10 71.2 266 28.2
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 1.5e-10 70.9 108 40.7
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.9e-10 70.5 209 35.9
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 2.5e-10 70.1 277 30.3
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 2.5e-10 70.1 277 30.3
Glyma.04G164800 Glycine max HOM05D002953 ORTHO05D003249 2.5e-10 70.1 166 36.7
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 2.5e-10 70.1 115 40.0
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 2.5e-10 70.1 309 29.4
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 2.5e-10 70.1 97 48.5
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 3.3e-10 69.7 256 30.5
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 3.3e-10 69.7 108 41.7
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 4.3e-10 69.3 279 28.3
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 4.3e-10 69.3 283 27.2
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 5.6e-10 68.9 261 31.4
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 5.6e-10 68.9 261 31.4
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 5.6e-10 68.9 281 27.8
DCAR_030027 Daucus carota HOM05D002953 ORTHO05D003249 7.3e-10 68.6 211 31.8
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 9.6e-10 68.2 225 30.7
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 9.6e-10 68.2 274 31.4
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 9.6e-10 68.2 279 29.0
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 1.3e-09 67.8 214 29.9
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 1.3e-09 67.8 214 29.9
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 1.6e-09 67.4 214 29.9
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 2.1e-09 67.0 111 37.8
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 2.8e-09 66.6 287 28.9
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 2.8e-09 66.6 160 32.5
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 4.8e-09 65.9 167 33.5
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 1.4e-08 64.3 230 29.1
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 1.8e-08 63.9 103 39.8
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 1.8e-08 63.9 252 28.6
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 1.8e-08 63.9 253 30.0
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 4.0e-08 62.8 278 27.0
Os03g0211500 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 6.9e-08 62.0 111 37.8
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 9.0e-08 61.6 237 30.4
CAN.G1445.15 Capsicum annuum HOM05D002953 ORTHO05D003249 9.0e-08 61.6 234 32.5
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 9.0e-08 61.6 265 29.1
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 1.2e-07 61.2 282 27.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.5e-07 60.8 284 26.8
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 1.5e-07 60.8 274 26.6
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 1.5e-07 60.8 273 27.8
BolC2t08700H Brassica oleracea HOM05D002953 ORTHO05D003249 2.0e-07 60.5 103 34.0
Thhalv10019347m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 2.0e-07 60.5 103 33.0
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 2.0e-07 60.5 259 25.1
BcaC03g15073 Brassica carinata HOM05D002953 ORTHO05D003249 3.4e-07 59.7 104 34.6
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 3.4e-07 59.7 278 27.7
AL1G25750 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 4.4e-07 59.3 277 29.2
C02p26300 Brassica napus HOM05D002318 ORTHO05D004713 4.4e-07 59.3 101 33.7
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 4.4e-07 59.3 274 26.6
CDE05G2801 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 4.4e-07 59.3 97 42.3
Phvul.003G186800 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 4.4e-07 59.3 194 34.0
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 4.4e-07 59.3 276 29.7
arahy.Tifrunner.gnm1.ann1.FH6P3F Arachis hypogaea HOM05D002953 ORTHO05D003249 5.8e-07 58.9 109 38.5
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 7.6e-07 58.5 98 33.7
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 7.6e-07 58.5 292 27.7
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 9.9e-07 58.2 176 30.1
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 1.3e-06 57.8 289 27.3
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 1.7e-06 57.4 200 31.5
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 2.2e-06 57.0 273 26.7
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 4.9e-06 55.8 98 32.7
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 8.4e-06 55.1 268 28.7


User provided reference genes

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