Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.7e-55 219.2 114 100.0
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 4.0e-33 144.8 107 73.8
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 8.9e-33 143.7 107 73.8
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.3e-28 129.8 107 70.1
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 1.7e-15 86.3 94 53.2
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 2.9e-15 85.5 93 51.6
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 2.7e-13 79.0 100 42.0
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 1.8e-12 76.3 101 43.6
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 2.3e-12 75.9 101 45.5
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 3.0e-12 75.5 92 50.0
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 3.9e-12 75.1 94 47.9
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-11 73.2 95 43.2
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 3.3e-11 72.0 94 44.7
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 5.6e-11 71.2 101 43.6
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 9.6e-11 70.5 99 44.4
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 9.6e-11 70.5 94 43.6
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 1.6e-10 69.7 94 44.7
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.8e-10 68.2 91 41.8
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 4.8e-10 68.2 92 43.5
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 6.2e-10 67.8 102 40.2
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 6.2e-10 67.8 95 41.1
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 6.2e-10 67.8 126 37.3
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.1e-09 67.0 103 40.8
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 1.4e-09 66.6 93 46.2
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 1.4e-09 66.6 103 40.8
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 1.8e-09 66.2 93 45.2
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 1.8e-09 66.2 87 43.7
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 2.4e-09 65.9 90 43.3
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 2.4e-09 65.9 90 43.3
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 3.1e-09 65.5 115 37.4
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 4.0e-09 65.1 96 39.6
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.3e-09 64.7 95 41.1
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 5.3e-09 64.7 94 41.5
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 6.9e-09 64.3 90 42.2
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 6.9e-09 64.3 92 41.3
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 6.9e-09 64.3 111 40.5
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 9.0e-09 63.9 90 43.3
COL.COLO4_28375 Corchorus olitorius HOM05D010298 ORTHO05D012539 1.2e-08 63.5 94 46.8
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 1.2e-08 63.5 101 37.6
Thecc.09G294000 Theobroma cacao HOM05D010298 ORTHO05D012539 1.5e-08 63.2 96 37.5
QL10p048111 Quercus lobata HOM05D010635 ORTHO05D006336 2.0e-08 62.8 95 41.1
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.6e-08 62.4 88 43.2
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.6e-08 62.4 94 40.4
Potri.017G019000 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.6e-08 62.4 95 44.2
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.6e-08 62.4 97 41.2
Potri.007G133200 Populus trichocarpa HOM05D010635 ORTHO05D006336 3.4e-08 62.0 88 38.6
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 3.4e-08 62.0 94 39.4
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 4.5e-08 61.6 96 36.5
Sabra07G0120000 Salix brachista HOM05D010635 ORTHO05D006336 4.5e-08 61.6 93 36.6
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 5.8e-08 61.2 96 41.7
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 5.8e-08 61.2 114 32.5
Thecc.09G294100 Theobroma cacao HOM05D010298 ORTHO05D012539 5.8e-08 61.2 93 40.9
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 7.6e-08 60.8 91 38.5
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 7.6e-08 60.8 92 39.1
Potri.017G018901 Populus trichocarpa HOM05D010635 ORTHO05D006336 1.3e-07 60.1 97 40.2
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.7e-07 59.7 90 43.3
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 2.9e-07 58.9 90 40.0
Sabra07G0108100 Salix brachista HOM05D010635 ORTHO05D006336 2.9e-07 58.9 92 39.1
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 2.9e-07 58.9 100 41.0
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 3.8e-07 58.5 99 36.4
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 3.8e-07 58.5 90 38.9
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 4.9e-07 58.2 114 34.2
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 4.9e-07 58.2 96 34.4
Gorai.006G107900 Gossypium raimondii HOM05D010298 ORTHO05D012539 6.4e-07 57.8 104 38.5
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 6.4e-07 57.8 101 34.7
Gohir.A03G027600 Gossypium hirsutum HOM05D010298 ORTHO05D012539 8.4e-07 57.4 95 37.9
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 8.4e-07 57.4 97 36.1
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 1.1e-06 57.0 95 36.8
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 1.1e-06 57.0 114 35.1
Gohir.A09G091466 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.4e-06 56.6 96 37.5
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.9e-06 56.2 96 36.5
Gohir.D03G141000 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.9e-06 56.2 95 37.9
Gohir.D09G091480 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.9e-06 56.2 96 37.5
Gorai.003G147800 Gossypium raimondii HOM05D010298 ORTHO05D012539 1.9e-06 56.2 95 37.9
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 1.9e-06 56.2 101 33.7
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 2.4e-06 55.8 96 41.7
Sabra07G0119900 Salix brachista HOM05D010635 ORTHO05D006336 2.4e-06 55.8 88 38.6
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.2e-06 55.1 119 34.5
Gohir.D09G086380 Gossypium hirsutum HOM05D010298 ORTHO05D012539 4.2e-06 55.1 95 38.9
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 4.2e-06 55.1 88 42.0
Gorai.006G102700 Gossypium raimondii HOM05D010298 ORTHO05D012539 4.2e-06 55.1 95 38.9
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 4.2e-06 55.1 103 38.8
Gohir.A03G027800 Gossypium hirsutum HOM05D010298 ORTHO05D012539 7.1e-06 54.3 95 37.9
Gorai.006G102600 Gossypium raimondii HOM05D010298 ORTHO05D012539 7.1e-06 54.3 95 37.9
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 7.1e-06 54.3 95 37.9
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 9.3e-06 53.9 94 38.3
TAR371G1152 Trochodendron aralioides HOM05D012741 ORTHO05D006336 9.3e-06 53.9 105 36.2


User provided reference genes

Program Settings