Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.4e-205 719.5 419 100.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.8e-139 500.0 419 70.9
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.8e-132 476.1 421 67.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 9.9e-130 467.6 421 65.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.4e-128 463.0 420 66.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.4e-128 463.0 413 68.8
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 7.1e-128 461.5 424 66.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 7.9e-127 458.0 420 67.4
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.6e-124 450.3 423 66.7
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.1e-123 447.6 429 69.2
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.4e-123 446.4 419 65.4
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 3.4e-122 442.6 431 65.4
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 9.9e-122 441.0 417 64.3
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 9.9e-122 441.0 420 64.5
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.7e-121 440.3 419 65.9
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.4e-120 436.4 417 63.5
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 5.5e-120 435.3 419 64.4
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.1e-119 433.3 417 63.3
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 7.9e-119 431.4 403 64.3
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.3e-118 430.6 423 67.4
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 8.7e-118 427.9 446 59.9
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.9e-117 426.8 365 68.2
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 3.3e-117 426.0 366 67.8
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 4.8e-116 422.2 421 64.1
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.2e-116 421.4 391 66.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.1e-115 421.0 420 63.8
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 2.4e-115 419.9 391 65.7
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.5e-114 417.2 391 64.2
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.5e-114 417.2 420 63.3
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.6e-114 416.4 423 63.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.4e-114 416.0 391 65.5
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.3e-113 414.1 397 62.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.9e-113 412.1 391 65.2
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.5e-112 408.7 399 67.7
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.7e-111 406.4 432 64.8
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 7.9e-111 404.8 420 65.5
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 7.4e-109 398.3 392 61.2
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 6.3e-108 395.2 422 59.2
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 6.9e-107 391.7 425 61.6
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-106 391.0 417 60.0
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 3.8e-105 386.0 415 59.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.5e-104 383.3 422 59.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 2.7e-103 379.8 510 52.5
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.6e-103 379.4 422 58.8
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.3e-102 377.5 423 59.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.3e-102 376.7 426 61.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.0e-102 376.3 394 55.6
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.1e-102 375.6 392 61.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.1e-101 374.4 420 57.4
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.1e-101 374.4 419 55.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 2.5e-101 373.2 424 57.8
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.3e-101 372.9 392 59.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 5.7e-101 372.1 413 61.3
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.7e-100 370.5 412 56.6
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 2.2e-100 370.2 421 56.1
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 4.8e-100 369.0 447 55.3
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 8.2e-100 368.2 446 56.1
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.4e-99 367.5 423 57.4
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 3.1e-99 366.3 414 63.5
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 2.6e-98 363.2 414 58.2
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.5e-98 362.5 414 58.0
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.0e-97 361.3 389 53.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.0e-97 361.3 425 57.4
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.3e-97 360.9 386 54.4
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.9e-96 357.1 387 53.0
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.9e-96 357.1 422 53.1
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 3.2e-96 356.3 388 52.8
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.2e-96 356.3 410 54.1
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 5.5e-96 355.5 414 54.3
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.7e-95 353.2 415 52.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.7e-95 353.2 413 55.4
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 4.7e-95 352.4 409 57.5
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 4.7e-95 352.4 422 56.2
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 7.9e-95 351.7 418 57.9
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.4e-94 350.9 395 52.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 3.9e-94 349.4 360 54.4
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 5.1e-94 349.0 356 55.9
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 5.1e-94 349.0 393 58.5
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 8.8e-94 348.2 411 51.3
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 2.0e-93 347.1 360 54.2
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 4.4e-93 345.9 386 53.4
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 4.4e-93 345.9 386 53.4
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 5.7e-93 345.5 420 53.3
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 5.7e-93 345.5 386 53.4
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 7.4e-93 345.1 392 51.5
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 9.7e-93 344.7 421 52.3
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.3e-92 344.4 443 52.4
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.2e-92 343.6 413 51.1
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 2.2e-92 343.6 424 59.0
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.8e-92 343.2 423 53.2
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.1e-91 341.3 430 54.9
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 1.8e-91 340.5 394 50.5
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 3.1e-91 339.7 421 52.7
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 3.1e-91 339.7 375 55.5
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 3.1e-91 339.7 376 59.0
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 4.1e-91 339.3 381 60.4
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 5.3e-91 339.0 410 56.1
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 6.9e-91 338.6 420 52.1
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 9.1e-91 338.2 410 54.4
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.2e-90 337.8 391 60.1
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 2.0e-90 337.0 339 56.9
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.9e-89 333.2 373 53.6
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 5.0e-89 332.4 398 55.0
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 2.5e-88 330.1 389 56.0
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.2e-88 329.7 403 53.6
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 4.2e-88 329.3 413 55.9
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 5.5e-88 328.9 414 52.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 7.2e-88 328.6 418 51.7
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 8.8e-86 321.6 421 55.1
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 8.8e-86 321.6 417 56.1
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.3e-84 317.8 408 51.7
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.8e-84 316.6 435 50.6
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 9.1e-83 311.6 419 50.1
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 7.7e-82 308.5 425 48.0
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.0e-81 308.1 317 66.6
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.5e-80 304.3 411 50.6
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 2.5e-80 303.5 443 49.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-79 301.2 424 50.0
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.7e-79 300.1 404 50.0
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 3.6e-79 299.7 429 51.3
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.7e-79 299.3 282 63.5
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.8e-78 297.4 448 52.2
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 2.2e-76 290.4 406 50.7
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 3.1e-75 286.6 446 45.1
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.5e-73 278.5 401 52.1
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.4e-72 275.0 370 50.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-70 270.4 393 45.3
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 4.4e-69 266.2 373 50.1
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.4e-69 266.2 313 63.9
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 5.7e-69 265.8 409 45.2
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 2.8e-68 263.5 414 45.9
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 6.3e-68 262.3 400 47.8
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.0e-66 257.3 357 47.3
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 5.0e-65 252.7 439 43.3
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 6.5e-65 252.3 384 45.3
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.4e-59 234.6 254 68.9
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.7e-55 219.5 372 41.4
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.0e-54 218.4 369 40.7
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 6.8e-54 215.7 355 41.4
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 8.3e-52 208.8 331 45.3
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 9.2e-51 205.3 300 51.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.2e-46 189.5 350 38.6
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.2e-45 188.3 398 38.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 9.2e-43 178.7 350 37.1
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.6e-42 176.4 164 59.8
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 7.8e-42 175.6 350 37.1
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 5.0e-41 172.9 372 37.4
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-38 164.9 276 43.5
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.7e-34 150.6 418 35.2
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.1e-30 138.7 399 33.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.2e-30 136.3 240 46.2
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 5.2e-30 136.3 154 55.8
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.3e-28 131.7 116 57.8
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.7e-28 131.3 294 35.4
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.9e-28 129.8 224 39.7
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 5.4e-27 126.3 352 32.7
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 9.2e-27 125.6 266 37.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.5e-26 123.6 190 44.7
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.9e-25 120.2 265 35.8
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.1e-22 112.1 201 41.8
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 1.8e-22 111.3 349 32.7
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 2.7e-18 97.4 103 56.3
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 8.7e-17 92.4 123 47.2
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.1e-16 92.0 146 41.1
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.3e-16 89.4 122 45.9
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.6e-15 88.2 118 49.2
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 8.1e-15 85.9 81 59.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.1e-14 84.0 202 47.5
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 3.4e-13 80.5 124 48.4
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.4e-11 74.3 81 46.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.7e-10 70.9 98 46.9
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.5e-10 70.5 80 51.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 8.7e-09 65.9 137 39.4
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.5e-08 65.1 112 39.3
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 5.6e-08 63.2 44 70.5
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.3e-07 62.0 90 45.6


User provided reference genes

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