Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023977m.g Citrus clementina HOM05D008143 ORTHO05D010256 7.8e-35 150.2 93 100.0
Atru.chr5.8 Acer truncatum HOM05D008143 ORTHO05D010256 8.6e-18 93.6 83 66.3
Medtr7g034335 Medicago truncatula HOM05D008143 ORTHO05D010256 2.5e-17 92.0 79 63.3
CiPaw.14G012000 Carya illinoinensis HOM05D008143 ORTHO05D010256 2.1e-16 89.0 88 61.4
TWI59G0267 Tripterygium wilfordii HOM05D008143 ORTHO05D010256 2.8e-16 88.6 94 55.3
Cpa.g.sc41.41 Carica papaya HOM05D008143 ORTHO05D010256 3.6e-16 88.2 89 57.3
Dinv43549 Davidia involucrata HOM05D000307 ORTHO05D010256 8.1e-16 87.0 75 65.3
Dinv43557 Davidia involucrata HOM05D008143 ORTHO05D010256 8.1e-16 87.0 75 65.3
Ca_26206_v3 Cicer arietinum L. HOM05D008143 ORTHO05D010256 1.4e-15 86.3 94 55.3
Oeu020235.1 Olea europaea HOM05D008143 ORTHO05D010256 1.4e-15 86.3 78 65.4
CAN.G700.4 Capsicum annuum HOM05D008143 ORTHO05D010256 1.8e-15 85.9 88 61.4
Dinv43993 Davidia involucrata HOM05D008143 ORTHO05D010256 1.8e-15 85.9 75 64.0
PGSC0003DMG400001819 Solanum tuberosum HOM05D008143 ORTHO05D010256 8.9e-15 83.6 91 60.4
Sed0007849 Sechium edule HOM05D000473 ORTHO05D009707 1.5e-14 82.8 89 56.2
Migut.N01814 Erythranthe guttata HOM05D008143 ORTHO05D010256 2.0e-14 82.4 59 78.0
PGR042G2567 Punica granatum HOM05D008143 ORTHO05D010256 2.6e-14 82.0 93 53.8
Solyc01g080950.3 Solanum lycopersicum HOM05D008143 ORTHO05D010256 3.4e-14 81.6 75 66.7
Sopen01g032540 Solanum pennellii HOM05D008143 ORTHO05D010256 3.4e-14 81.6 75 66.7
Glyma.06G310300 Glycine max HOM05D008143 ORTHO05D010256 4.4e-14 81.3 76 60.5
QL04p024258 Quercus lobata HOM05D008143 ORTHO05D010256 5.8e-14 80.9 76 61.8
Glyma.04G128500 Glycine max HOM05D008143 ORTHO05D010256 1.3e-13 79.7 76 59.2
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.3e-13 79.7 84 60.7
SHI04152 Sapria himalayana HOM05D008143 ORTHO05D010256 1.3e-13 79.7 59 72.9
Hma1.2p1_0076F.1_g039560 Hydrangea macrophylla HOM05D008143 ORTHO05D010256 1.7e-13 79.3 94 56.4
GSVIVG01026763001 Vitis vinifera HOM05D008143 ORTHO05D010256 2.2e-13 79.0 70 65.7
Lj1g0022952 Lotus japonicus HOM05D008143 ORTHO05D010256 2.9e-13 78.6 81 56.8
arahy.Tifrunner.gnm1.ann1.3N3IDJ Arachis hypogaea HOM05D008143 ORTHO05D010256 4.9e-13 77.8 73 65.8
arahy.Tifrunner.gnm1.ann1.H93UBA Arachis hypogaea HOM05D008143 ORTHO05D010256 4.9e-13 77.8 73 58.9
Psat3g161880 Pisum sativum HOM05D008143 ORTHO05D010256 6.4e-13 77.4 76 59.2
HanXRQChr01g0020571 Helianthus annuus HOM05D008143 ORTHO05D010256 8.4e-13 77.0 59 69.5
Migut.N01697 Erythranthe guttata HOM05D008143 ORTHO05D010256 1.1e-12 76.6 70 62.9
Sabra14G0139000 Salix brachista HOM05D008143 ORTHO05D010256 1.1e-12 76.6 84 58.3
TAR636G2193 Trochodendron aralioides HOM05D008143 ORTHO05D010256 1.1e-12 76.6 92 55.4
Nitab4.5_0001209g0030 Nicotiana tabacum HOM05D008143 ORTHO05D010256 1.4e-12 76.3 87 58.6
Prupe.2G109300 Prunus persica HOM05D008143 ORTHO05D010256 3.2e-12 75.1 59 67.8
MSTRG.28120 Avicennia marina HOM05D008143 ORTHO05D010256 4.2e-12 74.7 60 73.3
ECA248G2885 Erigeron canadensis HOM05D008143 ORTHO05D010256 4.2e-12 74.7 59 69.5
Aqoxy3G02407 Aquilegia oxysepala HOM05D008143 ORTHO05D010256 9.3e-12 73.6 92 53.3
CiPaw.13G019200 Carya illinoinensis HOM05D008143 ORTHO05D010256 1.2e-11 73.2 75 58.7
SGA_v2.0_scaffold4G02202 Striga asiatica HOM05D008143 ORTHO05D010256 1.6e-11 72.8 80 56.2
Actinidia21604 Actinidia chinensis HOM05D008143 ORTHO05D010256 2.1e-11 72.4 95 48.4
Potri.014G178900 Populus trichocarpa HOM05D008143 ORTHO05D010256 2.1e-11 72.4 70 62.9
MD00G1098100 Malus domestica HOM05D008143 ORTHO05D010256 2.7e-11 72.0 90 47.8
Peaxi162Scf01110g00012 Petunia axillaris HOM05D008143 ORTHO05D010256 2.7e-11 72.0 60 70.0
RcHm_v2.0_Chr1g0341271 Rosa chinensis HOM05D008143 ORTHO05D010256 3.5e-11 71.6 59 67.8
Duzib128G1063 Durio zibethinus HOM05D008143 ORTHO05D010256 4.6e-11 71.2 86 51.2
FvH4_7g08030 Fragaria vesca HOM05D008143 ORTHO05D010256 4.6e-11 71.2 59 66.1
FAN01G0067 Fragaria x ananassa HOM05D008143 ORTHO05D010256 4.6e-11 71.2 59 66.1
FAN10G1551 Fragaria x ananassa HOM05D008143 ORTHO05D010256 4.6e-11 71.2 59 66.1
Cc02_g26140 Coffea canephora HOM05D008143 ORTHO05D010256 6.0e-11 70.9 89 52.8
ClCG05G002660 Citrullus lanatus HOM05D008143 ORTHO05D010256 2.3e-10 68.9 59 69.5
FAN03G3180 Fragaria x ananassa HOM05D008143 ORTHO05D010256 3.0e-10 68.6 58 63.8
MELO3C006232.2 Cucumis melo HOM05D008143 ORTHO05D010256 3.9e-10 68.2 90 51.1
CsaV3_3G010110 Cucumis sativus L. HOM05D008143 ORTHO05D010256 3.9e-10 68.2 90 50.0
Nn1g00548 Nelumbo nucifera HOM05D008143 ORTHO05D010256 8.7e-10 67.0 96 44.8
Sed0022797 Sechium edule HOM05D008143 ORTHO05D010256 8.7e-10 67.0 59 66.1
Phvul.005G016300 Phaseolus vulgaris HOM05D008143 ORTHO05D010256 1.9e-09 65.9 81 48.1
Thecc.10G157800 Theobroma cacao HOM05D008143 ORTHO05D010256 1.9e-09 65.9 79 51.9
Nn6g33614 Nelumbo nucifera HOM05D008143 ORTHO05D010256 7.3e-09 63.9 59 61.0
Lalb_Chr19g0126471 Lupinus albus HOM05D008143 ORTHO05D010256 9.6e-09 63.5 87 47.1
PSO017G2691 Papaver somniferum HOM05D008143 ORTHO05D010256 1.6e-08 62.8 80 51.2
DCAR_015763 Daucus carota HOM05D008143 ORTHO05D010256 2.8e-08 62.0 78 53.8
Sabra05G0099100 Salix brachista HOM05D008143 ORTHO05D010256 3.6e-08 61.6 55 69.1
MD02G1236800 Malus domestica HOM05D008143 ORTHO05D010256 6.9e-07 57.4 45 66.7
Rhsim01G0146400 Rhododendron simsii HOM05D002374 ORTHO05D010256 3.4e-06 55.1 72 50.0
AUR62023336 Chenopodium quinoa HOM05D008143 ORTHO05D010256 5.8e-06 54.3 65 55.4


User provided reference genes

Program Settings