Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.4e-58 228.0 108 100.0
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.3e-51 204.1 107 92.5
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.4e-40 169.5 110 72.7
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.7e-39 165.2 110 72.7
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.5e-37 159.5 105 71.4
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.9e-37 159.1 109 70.6
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.5e-37 158.7 106 78.3
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 2.2e-36 155.6 109 67.9
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 2.8e-36 155.2 109 68.8
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.7e-36 154.8 109 66.1
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 6.3e-36 154.1 112 69.6
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.3e-36 154.1 109 67.0
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-35 152.5 108 68.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.8e-35 152.5 109 67.9
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.1e-35 151.8 111 66.7
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 5.3e-35 151.0 109 68.8
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.0e-35 150.2 109 68.8
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.0e-35 150.2 109 68.8
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.2e-34 149.8 109 67.0
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-34 149.1 109 67.9
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-34 149.1 109 67.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 2.0e-34 149.1 109 67.9
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 4.5e-34 147.9 109 63.3
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.5e-34 147.9 106 65.1
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 5.9e-34 147.5 111 65.8
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 5.9e-34 147.5 110 68.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.6e-34 147.1 108 66.7
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.6e-34 147.1 108 65.7
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.6e-34 147.1 108 65.7
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.3e-33 146.4 110 64.5
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.3e-33 146.4 106 66.0
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.3e-33 146.4 106 64.2
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.3e-33 146.4 110 64.5
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.7e-33 146.0 111 64.9
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.7e-33 146.0 113 63.7
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.7e-33 146.0 106 64.2
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.9e-33 145.2 111 65.8
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.9e-33 145.2 109 66.1
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 3.8e-33 144.8 109 65.1
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 5.0e-33 144.4 110 67.3
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 6.5e-33 144.1 106 67.0
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 6.5e-33 144.1 110 66.4
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 6.5e-33 144.1 109 61.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 8.5e-33 143.7 103 61.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.1e-32 143.3 109 65.1
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.4e-32 142.9 109 66.1
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.9e-32 142.5 112 63.4
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.5e-32 142.1 110 65.5
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.5e-32 142.1 110 65.5
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 3.2e-32 141.7 110 61.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 3.2e-32 141.7 109 66.1
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.2e-32 141.4 110 65.5
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 4.2e-32 141.4 109 67.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 5.5e-32 141.0 106 63.2
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 7.2e-32 140.6 111 62.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 7.2e-32 140.6 110 66.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 9.3e-32 140.2 112 58.9
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 9.3e-32 140.2 104 62.5
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.2e-31 139.8 102 62.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.7e-31 138.7 109 60.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 3.6e-31 138.3 111 62.2
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 3.6e-31 138.3 103 65.0
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 4.6e-31 137.9 109 63.3
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 7.9e-31 137.1 113 59.3
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.0e-30 136.7 110 63.6
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.4e-30 136.3 104 61.5
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.4e-30 136.3 109 58.7
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.4e-30 136.3 111 65.8
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.8e-30 136.0 111 61.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.8e-30 136.0 111 61.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.8e-30 136.0 109 59.6
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.3e-30 135.6 108 62.0
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 2.3e-30 135.6 107 58.9
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.0e-30 135.2 106 62.3
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 3.0e-30 135.2 106 58.5
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 3.9e-30 134.8 112 57.1
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 5.1e-30 134.4 109 60.6
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.1e-30 134.4 111 64.0
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 6.7e-30 134.0 109 60.6
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 6.7e-30 134.0 109 60.6
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 8.8e-30 133.7 101 64.4
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.1e-29 133.3 105 65.7
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.9e-29 132.5 110 60.9
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.9e-29 132.5 102 60.8
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.9e-29 132.5 109 56.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.9e-29 132.5 109 60.6
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 3.3e-29 131.7 109 59.6
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 3.3e-29 131.7 109 59.6
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 4.3e-29 131.3 109 56.9
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 5.7e-29 131.0 108 62.0
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 7.4e-29 130.6 105 57.1
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.7e-28 129.4 107 58.9
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.7e-28 129.4 111 56.8
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 2.2e-28 129.0 107 58.9
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.7e-28 128.3 109 53.2
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.7e-28 128.3 111 62.2
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.7e-28 128.3 111 62.2
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 4.8e-28 127.9 114 57.0
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.8e-28 127.9 107 58.9
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 1.1e-27 126.7 92 60.9
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 2.4e-27 125.6 109 53.2
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 6.9e-27 124.0 106 55.7
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.1e-27 123.6 100 58.0
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.4e-26 121.7 105 55.2
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.5e-26 121.3 106 53.8
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.5e-26 121.3 105 56.2
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 6.5e-25 117.5 91 54.9
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 6.5e-25 117.5 107 52.3
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 8.5e-25 117.1 107 52.3
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 5.5e-24 114.4 107 51.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.2e-23 113.2 108 51.9
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.0e-22 110.2 109 51.4
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-22 110.2 71 70.4
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-22 109.4 80 65.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.9e-22 108.2 112 49.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 5.1e-22 107.8 70 70.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 5.1e-22 107.8 70 70.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.7e-20 102.8 110 48.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 2.8e-20 102.1 83 59.0
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 3.7e-20 101.7 109 47.7
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.8e-20 101.3 112 46.4
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 6.5e-17 90.9 81 49.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.9e-16 89.4 97 45.4
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.9e-16 89.4 97 45.4
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.5e-16 89.0 107 43.0
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.2e-10 70.1 70 45.7
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.7e-09 66.2 110 35.5
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.5e-08 63.2 105 36.2
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.9e-08 62.8 108 34.3
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.6e-07 58.5 103 33.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 8.0e-07 57.4 35 74.3
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 8.8e-06 53.9 53 47.2


User provided reference genes

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