Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 1.2e-200 703.7 559 100.0
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 1.5e-110 404.4 268 75.4
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 3.5e-99 366.7 269 67.7
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 1.3e-98 364.8 269 68.0
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.0e-90 338.6 267 64.4
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.8e-90 337.8 267 62.9
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 6.7e-90 335.9 258 64.0
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 6.7e-90 335.9 261 62.8
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 1.4e-87 328.2 277 60.3
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 1.8e-87 327.8 280 60.0
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.4e-84 318.2 279 59.1
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 4.2e-84 316.6 278 58.3
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 4.2e-84 316.6 278 59.7
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 1.6e-83 314.7 274 60.9
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 2.1e-83 314.3 278 58.6
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 2.7e-83 313.9 277 58.5
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.8e-82 311.2 685 54.6
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.9e-81 307.8 275 58.2
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 9.6e-81 305.4 267 58.4
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 2.4e-79 300.8 272 58.5
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.0e-78 297.7 269 57.2
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 2.0e-78 297.7 269 57.2
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.9e-77 293.9 269 56.5
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.9e-76 291.2 275 56.7
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 5.5e-76 289.7 273 57.1
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 9.3e-76 288.9 273 56.4
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.2e-75 288.5 285 56.8
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 7.9e-75 285.8 285 56.5
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.0e-74 285.4 273 54.9
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 1.8e-74 284.6 258 60.1
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 8.7e-74 282.3 274 55.5
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 1.1e-73 282.0 274 56.2
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 5.7e-73 279.6 249 57.4
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 4.8e-72 276.6 269 55.8
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 1.5e-70 271.6 264 55.7
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 5.9e-70 269.6 672 49.7
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 2.9e-69 267.3 278 51.4
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 5.5e-68 263.1 269 54.6
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 9.4e-68 262.3 698 30.1
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.4e-66 258.5 269 52.0
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.8e-66 258.1 262 52.3
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 8.8e-66 255.8 273 51.6
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 3.3e-65 253.8 255 54.1
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 3.3e-65 253.8 252 52.0
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 3.3e-65 253.8 295 48.5
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 9.7e-65 252.3 250 51.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.2e-64 251.1 267 51.7
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 2.2e-64 251.1 267 50.6
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 6.3e-64 249.6 254 52.4
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.1e-63 248.8 265 52.8
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 1.8e-63 248.1 190 68.4
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 1.8e-63 248.1 260 51.5
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 1.2e-62 245.4 261 49.8
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 1.5e-62 245.0 254 51.6
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 2.0e-62 244.6 261 50.2
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 5.9e-62 243.0 254 51.2
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 6.5e-61 239.6 266 48.9
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.6e-59 235.0 264 50.4
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 3.6e-59 233.8 254 49.2
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 4.7e-59 233.4 266 48.9
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 7.9e-59 232.6 272 46.7
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.0e-58 232.3 258 48.8
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 1.4e-58 231.9 263 50.2
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 2.3e-58 231.1 268 50.4
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 3.0e-58 230.7 265 50.2
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.1e-57 228.8 279 47.0
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.0e-57 228.0 274 46.0
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 2.0e-57 228.0 264 47.0
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 9.7e-57 225.7 264 46.6
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 9.7e-57 225.7 258 49.6
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.8e-56 224.2 264 46.2
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 3.1e-55 220.7 261 46.7
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 3.5e-54 217.2 266 44.4
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.0e-53 215.7 264 43.6
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 1.5e-52 211.8 249 48.2
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 5.5e-52 209.9 256 44.5
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 9.4e-52 209.1 256 44.1
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.2e-51 208.8 264 43.9
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.6e-51 207.2 255 45.5
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 4.0e-50 203.8 256 45.3
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 3.3e-49 200.7 267 44.2
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 2.8e-48 197.6 255 45.5
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.2e-46 192.2 501 29.7
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 5.9e-46 189.9 234 46.2
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 1.3e-45 188.7 665 49.6
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 5.7e-41 173.3 129 77.5
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 3.1e-39 167.5 263 37.6
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 5.9e-38 163.3 95 80.0
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 7.7e-38 162.9 277 36.1
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 7.7e-38 162.9 272 37.9
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.5e-36 158.7 616 34.4
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.0e-34 152.5 163 51.5
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 4.0e-34 150.6 266 39.1
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 3.4e-33 147.5 166 48.2
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 5.7e-33 146.7 208 41.3
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 5.7e-33 146.7 208 41.3
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 3.7e-32 144.1 129 69.8
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 2.4e-31 141.4 166 47.0
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.5e-30 137.1 80 77.5
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.3e-29 135.6 121 57.0
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 2.9e-29 134.4 137 54.0
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 8.6e-29 132.9 235 39.1
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 5.6e-28 130.2 90 63.3
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 1.7e-24 118.6 73 75.3
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 3.2e-23 114.4 94 61.7
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 9.2e-23 112.8 60 83.3
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 1.6e-22 112.1 61 80.3
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 2.0e-22 111.7 77 71.4
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 5.6e-20 103.6 73 64.4
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 1.6e-19 102.1 140 45.0
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 1.8e-18 98.6 61 70.5
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 1.5e-17 95.5 72 62.5
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 8.3e-16 89.7 62 62.9
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 3.5e-14 84.3 47 76.6
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 2.6e-09 68.2 105 43.8
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 3.4e-09 67.8 267 22.8
RcHm_v2.0_Chr7g0215771 Rosa chinensis HOM05D006218 ORTHO05D007338 9.8e-09 66.2 235 23.0
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.9e-08 63.9 183 24.0
ATR0326G024 Amborella trichopoda HOM05D000424 ORTHO05D000355 1.1e-07 62.8 269 21.2
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 3.2e-07 61.2 225 24.0
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 4.1e-07 60.8 255 20.4
PGR119G1028 Punica granatum HOM05D000424 ORTHO05D000355 4.1e-07 60.8 249 20.5
ATR0824G150 Amborella trichopoda HOM05D002460 ORTHO05D002716 7.1e-07 60.1 108 28.7
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 7.1e-07 60.1 198 23.2
CSS0036772 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 1.2e-06 59.3 204 21.1
CSS0043525 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 1.2e-06 59.3 204 21.1
SHI24507 Sapria himalayana HOM05D006218 ORTHO05D007338 1.2e-06 59.3 141 24.8
TWI38G2061 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 1.2e-06 59.3 240 24.2
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.6e-06 58.9 131 26.7
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.6e-06 58.9 32 81.2
TAR627G0861 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.6e-06 58.9 170 27.6
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 2.1e-06 58.5 160 25.0
FvH4_5g25350 Fragaria vesca HOM05D006218 ORTHO05D007338 2.1e-06 58.5 138 25.4
FAN18G0123 Fragaria x ananassa HOM05D006218 ORTHO05D007338 2.1e-06 58.5 138 25.4
TAR627G0143 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.1e-06 58.5 135 30.4
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.7e-06 58.2 158 24.7
CDE10G1349 Ceratophyllum demersum HOM05D007383 ORTHO05D009254 2.7e-06 58.2 156 28.8
FAN08G0845 Fragaria x ananassa HOM05D006218 ORTHO05D007338 2.7e-06 58.2 155 24.5
RcHm_v2.0_Chr6g0271861 Rosa chinensis HOM05D006218 ORTHO05D007338 2.7e-06 58.2 138 25.4
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 3.5e-06 57.8 180 26.1
TPR.G7961 Trifolium pratense HOM05D000424 ORTHO05D000355 3.5e-06 57.8 244 25.0
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 4.6e-06 57.4 189 22.8
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 4.6e-06 57.4 251 23.5
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 4.6e-06 57.4 214 23.8
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 6.0e-06 57.0 112 30.4
Cfa003712 Carpinus fangiana HOM05D006232 ORTHO05D007746 6.0e-06 57.0 127 32.3
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 6.0e-06 57.0 117 33.3
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 6.0e-06 57.0 198 22.7
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 6.0e-06 57.0 95 28.4
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 6.0e-06 57.0 182 23.1
Cc02_g24050 Coffea canephora HOM05D006740 ORTHO05D008571 7.8e-06 56.6 143 27.3
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 7.8e-06 56.6 103 31.1


User provided reference genes

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