Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 2.7e-49 198.4 100 100.0
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 1.6e-17 92.8 51 88.2
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 2.1e-17 92.4 50 86.0
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 2.7e-17 92.0 51 86.3
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 3.5e-17 91.7 50 84.0
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 3.5e-17 91.7 51 82.4
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 3.5e-17 91.7 50 84.0
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.5e-17 91.7 50 86.0
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 3.5e-17 91.7 50 84.0
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 4.6e-17 91.3 50 84.0
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 6.0e-17 90.9 50 88.0
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 6.0e-17 90.9 50 88.0
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 6.0e-17 90.9 49 85.7
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.0e-16 90.1 51 82.4
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 1.0e-16 90.1 52 80.8
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 1.3e-16 89.7 68 67.6
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.3e-16 89.7 50 82.0
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.3e-16 89.7 50 82.0
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 1.8e-16 89.4 51 82.4
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 2.3e-16 89.0 49 83.7
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 2.3e-16 89.0 50 84.0
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 3.0e-16 88.6 48 87.5
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 3.9e-16 88.2 50 84.0
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.9e-16 88.2 50 82.0
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 3.9e-16 88.2 67 67.2
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 5.1e-16 87.8 51 82.4
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 5.1e-16 87.8 48 87.5
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 6.7e-16 87.4 50 82.0
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 6.7e-16 87.4 49 83.7
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 6.7e-16 87.4 49 87.8
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 8.7e-16 87.0 48 87.5
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 8.7e-16 87.0 49 83.7
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 1.1e-15 86.7 51 80.4
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 1.1e-15 86.7 85 58.8
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 1.5e-15 86.3 49 83.7
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 1.9e-15 85.9 50 80.0
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.9e-15 85.9 49 83.7
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 2.5e-15 85.5 48 85.4
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 2.5e-15 85.5 49 81.6
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 3.3e-15 85.1 50 80.0
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 3.3e-15 85.1 51 78.4
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 4.3e-15 84.7 50 84.0
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 4.3e-15 84.7 52 82.7
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 5.6e-15 84.3 51 78.4
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 5.6e-15 84.3 51 78.4
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 7.4e-15 84.0 50 78.0
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 7.4e-15 84.0 48 79.2
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 7.4e-15 84.0 50 78.0
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 7.4e-15 84.0 50 78.0
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 9.6e-15 83.6 50 78.0
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 1.6e-14 82.8 49 77.6
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 1.6e-14 82.8 49 75.5
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 2.8e-14 82.0 50 72.0
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 3.7e-14 81.6 47 83.0
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 3.7e-14 81.6 47 80.9
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 4.8e-14 81.3 47 78.7
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 4.8e-14 81.3 51 80.4
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 6.2e-14 80.9 52 78.8
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 6.2e-14 80.9 47 76.6
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 8.1e-14 80.5 48 79.2
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 1.1e-13 80.1 45 86.7
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 1.1e-13 80.1 45 86.7
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 1.1e-13 80.1 45 86.7
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 1.1e-13 80.1 47 78.7
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 1.1e-13 80.1 49 75.5
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 1.4e-13 79.7 49 75.5
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 1.4e-13 79.7 48 79.2
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 1.4e-13 79.7 52 78.8
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 1.4e-13 79.7 47 76.6
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 1.8e-13 79.3 51 78.4
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 2.4e-13 79.0 66 66.7
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 3.1e-13 78.6 49 75.5
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 2.0e-12 75.9 49 71.4
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 2.0e-12 75.9 47 76.6
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 2.6e-12 75.5 49 79.6
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 4.5e-12 74.7 39 87.2
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 5.8e-12 74.3 45 77.8
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 5.8e-12 74.3 48 77.1
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.8e-12 74.3 52 69.2
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.8e-12 74.3 52 69.2
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 1.3e-11 73.2 41 80.5
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 2.9e-11 72.0 49 67.3
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 8.4e-11 70.5 48 70.8
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 7.1e-10 67.4 53 58.5
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 1.3e-08 63.2 46 67.4
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 2.5e-07 58.9 29 96.6
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 1.3e-06 56.6 29 93.1
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 2.1e-06 55.8 58 53.4
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 3.7e-06 55.1 32 81.2
Atru.chr1.372 Acer truncatum HOM05D007712 ORTHO05D009755 4.8e-06 54.7 32 87.5
Atru.chr2.3306 Acer truncatum HOM05D007712 ORTHO05D009755 4.8e-06 54.7 32 87.5


User provided reference genes

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