Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 7.1e-78 293.9 152 100.0
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 2.8e-13 79.3 65 61.5
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-12 76.6 107 43.0
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 3.0e-12 75.9 71 54.9
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 3.0e-12 75.9 131 42.0
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.0e-12 75.5 107 42.1
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 4.0e-12 75.5 65 56.9
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-12 75.1 131 42.0
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.2e-12 75.1 107 42.1
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.8e-12 74.7 107 42.1
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.8e-12 74.7 102 43.1
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 8.9e-12 74.3 108 49.1
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.2e-11 73.9 134 39.6
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.5e-11 73.6 131 40.5
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 2.6e-11 72.8 66 53.0
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.6e-11 72.8 107 42.1
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.4e-11 72.4 67 59.7
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 3.4e-11 72.4 71 56.3
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 5.7e-11 71.6 62 56.5
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.7e-11 71.6 63 52.4
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.7e-11 71.6 67 59.7
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.5e-11 71.2 67 53.7
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.5e-11 71.2 121 39.7
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 7.5e-11 71.2 63 52.4
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.8e-11 70.9 67 58.2
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.8e-11 70.9 112 38.4
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 9.8e-11 70.9 134 38.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 9.8e-11 70.9 66 59.1
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 9.8e-11 70.9 67 52.2
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.7e-10 70.1 96 49.0
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.7e-10 70.1 62 54.8
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.7e-10 70.1 63 58.7
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.7e-10 70.1 63 50.8
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 2.2e-10 69.7 62 54.8
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 2.2e-10 69.7 68 51.5
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.9e-10 69.3 98 44.9
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.9e-10 69.3 62 56.5
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.7e-10 68.9 85 47.1
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.9e-10 68.6 74 50.0
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 4.9e-10 68.6 96 42.7
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.4e-10 68.2 98 41.8
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 6.4e-10 68.2 66 51.5
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 6.4e-10 68.2 62 53.2
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 8.3e-10 67.8 66 51.5
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 8.3e-10 67.8 100 41.0
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 8.3e-10 67.8 116 38.8
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.1e-09 67.4 130 36.9
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 1.1e-09 67.4 104 44.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.1e-09 67.4 66 50.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-09 67.0 67 52.2
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-09 67.0 67 52.2
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 1.4e-09 67.0 105 41.0
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.4e-09 67.0 66 48.5
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-09 67.0 92 41.3
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.4e-09 67.0 72 52.8
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.8e-09 66.6 66 53.0
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.8e-09 66.6 68 48.5
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-09 66.6 67 47.8
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.4e-09 66.2 67 50.7
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.2e-09 65.9 68 51.5
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-09 65.9 63 49.2
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 3.2e-09 65.9 105 41.0
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 3.2e-09 65.9 105 41.0
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 4.1e-09 65.5 72 50.0
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.4e-09 65.1 68 47.1
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 5.4e-09 65.1 71 47.9
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 5.4e-09 65.1 112 40.2
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 5.4e-09 65.1 76 47.4
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 5.4e-09 65.1 49 59.2
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 7.0e-09 64.7 50 60.0
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 7.0e-09 64.7 50 60.0
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 7.0e-09 64.7 62 54.8
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 7.0e-09 64.7 64 50.0
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 7.0e-09 64.7 62 50.0
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 7.0e-09 64.7 66 51.5
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 9.2e-09 64.3 72 51.4
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 9.2e-09 64.3 68 51.5
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 9.2e-09 64.3 97 42.3
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 9.2e-09 64.3 63 50.8
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 9.2e-09 64.3 117 38.5
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.2e-08 63.9 86 43.0
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 1.2e-08 63.9 111 37.8
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.2e-08 63.9 65 50.8
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.2e-08 63.9 66 51.5
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.2e-08 63.9 65 50.8
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.2e-08 63.9 65 50.8
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.6e-08 63.5 68 48.5
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.6e-08 63.5 123 35.8
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.6e-08 63.5 96 41.7
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.0e-08 63.2 70 47.1
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.0e-08 63.2 70 48.6
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 2.0e-08 63.2 77 45.5
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.0e-08 63.2 70 47.1
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.0e-08 63.2 66 51.5
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 2.0e-08 63.2 71 49.3
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.7e-08 62.8 63 50.8
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 3.5e-08 62.4 81 44.4
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 3.5e-08 62.4 65 52.3
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.5e-08 62.4 63 49.2
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.5e-08 62.4 68 52.9
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.5e-08 62.4 70 52.9
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 3.5e-08 62.4 67 46.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 4.6e-08 62.0 58 51.7
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 5.9e-08 61.6 75 49.3
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 5.9e-08 61.6 72 48.6
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 5.9e-08 61.6 108 38.0
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.9e-08 61.6 108 38.0
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 5.9e-08 61.6 72 50.0
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 7.8e-08 61.2 125 32.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 7.8e-08 61.2 71 45.1
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 7.8e-08 61.2 93 40.9
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.0e-07 60.8 73 47.9
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.0e-07 60.8 49 59.2
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.0e-07 60.8 95 38.9
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.3e-07 60.5 67 49.3
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 1.3e-07 60.5 71 46.5
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.3e-07 60.5 100 39.0
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.3e-07 60.5 142 33.1
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.7e-07 60.1 97 36.1
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-07 60.1 108 37.0
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-07 60.1 108 37.0
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.7e-07 60.1 108 38.9
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.3e-07 59.7 103 40.8
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 2.3e-07 59.7 71 47.9
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.3e-07 59.7 106 38.7
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-07 59.3 98 39.8
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-07 59.3 93 41.9
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 3.0e-07 59.3 63 50.8
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 3.0e-07 59.3 70 47.1
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 3.9e-07 58.9 63 47.6
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.9e-07 58.9 103 42.7
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 5.0e-07 58.5 67 46.3
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 6.6e-07 58.2 46 60.9
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 6.6e-07 58.2 137 33.6
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 8.6e-07 57.8 99 36.4
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 8.6e-07 57.8 100 39.0
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.1e-06 57.4 127 37.0
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 1.1e-06 57.4 49 59.2
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 1.1e-06 57.4 92 40.2
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.5e-06 57.0 63 46.0
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 1.5e-06 57.0 74 44.6
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.5e-06 57.0 99 34.3
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 1.9e-06 56.6 74 43.2
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 1.9e-06 56.6 71 46.5
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 2.5e-06 56.2 68 47.1
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.5e-06 56.2 68 45.6
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.3e-06 55.8 78 46.2
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 3.3e-06 55.8 97 39.2
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 4.3e-06 55.5 66 43.9
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.3e-06 55.5 66 43.9
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 4.3e-06 55.5 68 45.6
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 4.3e-06 55.5 78 46.2
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 5.6e-06 55.1 46 54.3
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 5.6e-06 55.1 68 44.1
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 5.6e-06 55.1 75 46.7
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 7.3e-06 54.7 100 40.0
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 9.5e-06 54.3 100 40.0
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.5e-06 54.3 47 55.3
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 9.5e-06 54.3 138 32.6


User provided reference genes

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