Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 9.9e-194 679.9 326 100.0
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 9.4e-136 487.3 367 70.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 8.3e-108 394.4 368 57.1
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 3.2e-99 365.9 370 53.8
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 9.2e-99 364.4 370 54.3
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.2e-98 364.0 370 52.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 6.6e-97 358.2 358 53.6
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.1e-96 357.5 371 52.6
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 4.3e-96 355.5 371 52.3
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 7.3e-96 354.8 358 53.1
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.3e-94 349.7 368 51.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 8.9e-94 347.8 370 51.1
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.6e-93 346.3 370 51.6
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.4e-93 345.9 370 51.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.4e-93 345.5 370 53.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 9.9e-93 344.4 372 51.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 9.9e-93 344.4 367 52.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 9.9e-93 344.4 367 51.8
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.2e-92 343.2 370 51.6
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.7e-92 342.4 372 51.6
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 3.7e-92 342.4 367 51.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 4.9e-92 342.0 370 51.1
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 4.9e-92 342.0 368 52.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.1e-91 340.9 356 54.2
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.1e-91 340.9 367 50.4
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.9e-91 340.1 368 52.4
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.4e-91 339.7 358 52.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.4e-91 339.7 370 51.6
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.2e-91 339.3 367 52.3
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.6e-90 337.0 370 48.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.1e-90 336.7 375 50.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 2.7e-90 336.3 370 48.9
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.6e-90 335.5 368 52.2
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.0e-90 335.1 356 49.7
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.0e-89 334.3 354 53.7
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.3e-89 333.2 371 50.4
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 3.0e-89 332.8 355 49.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 3.0e-89 332.8 370 49.7
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 8.6e-89 331.3 400 47.8
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 8.6e-89 331.3 370 48.4
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 8.6e-89 331.3 370 47.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.6e-88 328.6 373 50.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 5.6e-88 328.6 358 51.7
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 9.5e-88 327.8 358 51.4
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.2e-87 327.4 356 51.1
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.7e-87 325.5 370 50.0
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.1e-86 324.3 415 45.8
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.4e-86 323.9 373 48.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.4e-86 323.2 355 48.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.1e-86 322.8 366 50.8
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.1e-86 322.8 358 50.6
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.0e-86 322.4 370 49.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-86 321.6 370 48.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 8.9e-86 321.2 367 48.2
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.5e-85 320.5 370 46.5
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 7.6e-85 318.2 370 46.8
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.3e-84 317.4 356 48.6
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.3e-84 317.4 303 55.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.9e-84 316.2 374 46.3
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 6.4e-84 315.1 346 51.4
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 6.4e-84 315.1 367 48.0
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 8.4e-84 314.7 372 49.2
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.2e-83 312.8 367 47.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 3.2e-83 312.8 357 49.3
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 4.1e-83 312.4 368 47.6
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 9.2e-83 311.2 367 47.4
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.5e-82 309.3 372 47.8
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 6.0e-82 308.5 367 48.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.0e-81 307.8 367 47.1
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.1e-81 305.4 339 51.9
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.5e-80 303.9 368 47.8
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.3e-80 302.8 374 45.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 9.6e-80 301.2 354 48.9
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.2e-79 300.8 365 46.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.6e-79 300.4 372 46.0
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.4e-78 297.4 327 51.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.4e-78 296.6 339 50.7
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 3.1e-78 296.2 369 45.0
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 5.2e-78 295.4 311 51.4
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.0e-77 293.5 356 48.0
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 4.4e-77 292.4 367 45.8
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 4.4e-77 292.4 367 45.8
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 4.4e-77 292.4 332 50.0
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 5.8e-77 292.0 367 46.0
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 5.8e-77 292.0 343 47.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 7.6e-77 291.6 353 47.6
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 9.9e-77 291.2 360 45.8
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 3.8e-76 289.3 383 43.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.4e-76 288.1 365 45.2
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 2.7e-74 283.1 363 45.5
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.0e-73 281.2 314 47.8
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-73 280.8 371 44.5
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.3e-73 280.8 371 44.5
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.1e-72 277.7 304 51.6
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.9e-72 276.9 300 51.3
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.3e-70 268.9 366 41.5
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.5e-69 265.8 357 43.1
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 9.9e-69 264.6 365 41.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.9e-68 263.1 329 47.4
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.0e-65 254.6 361 43.8
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.8e-65 253.8 357 40.9
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.3e-64 249.2 371 41.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.3e-64 249.2 371 41.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.3e-64 249.2 371 41.0
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 4.3e-64 249.2 314 43.0
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.3e-64 249.2 372 40.6
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.7e-63 246.1 357 41.2
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 7.6e-61 238.4 367 39.8
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 8.7e-57 224.9 367 40.1
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.9e-56 223.8 304 44.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 5.6e-56 222.2 372 39.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 5.6e-56 222.2 359 39.8
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 5.3e-54 215.7 233 50.6
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 9.0e-54 214.9 234 49.6
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 4.5e-53 212.6 323 41.5
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.1e-51 208.0 231 51.1
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.5e-51 206.8 224 51.3
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 9.3e-51 204.9 349 40.1
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 4.6e-50 202.6 344 39.5
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 7.9e-50 201.8 171 57.3
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 4.8e-47 192.6 347 34.9
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 2.2e-44 183.7 338 34.6
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.9e-43 180.6 315 38.4
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 2.1e-42 177.2 203 51.2
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 3.6e-42 176.4 207 47.8
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.4e-38 163.7 355 32.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.4e-33 147.9 161 50.3
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 7.0e-30 135.6 330 29.7
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.5e-27 125.9 320 30.6
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.2e-18 98.2 134 44.0
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.0e-18 95.5 58 77.6
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.0e-17 95.1 100 48.0
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 3.3e-16 90.1 391 25.1
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.2e-12 77.4 105 42.9
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-10 71.6 103 39.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 9.8e-08 62.0 152 31.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-07 60.8 62 46.8
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.8e-07 60.5 43 60.5


User provided reference genes

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