Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 2.2e-263 911.8 465 100.0
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 3.5e-208 728.4 465 80.6
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 7.7e-208 727.2 465 80.0
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 3.4e-203 711.8 466 78.3
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.8e-202 708.8 467 79.2
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 1.4e-201 706.4 466 77.0
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.5e-198 695.7 465 77.4
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 7.2e-198 694.1 467 77.5
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 5.2e-196 688.0 470 76.6
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 6.8e-196 687.6 465 75.1
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 3.7e-194 681.8 465 74.6
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.8e-193 679.5 470 75.3
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 5.9e-192 674.5 467 75.6
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 2.3e-191 672.5 465 74.0
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.9e-191 672.2 467 74.3
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.8e-188 661.0 465 72.7
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 2.6e-187 659.1 465 72.7
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.6e-187 659.1 465 72.7
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.4e-187 658.3 465 73.3
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.3e-186 656.8 465 72.5
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.7e-186 655.2 465 72.0
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 6.3e-186 654.4 467 73.0
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.4e-185 653.3 465 72.3
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.4e-185 651.4 469 73.6
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.2e-184 650.2 467 74.3
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 6.6e-183 644.4 430 77.9
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.9e-182 642.9 466 73.6
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 3.3e-182 642.1 466 72.5
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 9.5e-182 640.6 496 68.8
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.2e-181 640.2 467 72.8
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.6e-181 638.6 465 72.3
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 6.1e-181 637.9 466 71.2
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.5e-179 633.3 465 70.5
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 2.6e-179 632.5 466 70.2
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.3e-178 630.2 466 72.5
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 9.2e-177 624.0 466 70.2
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.0e-175 620.5 466 70.2
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 4.3e-174 615.1 468 69.2
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 3.6e-173 612.1 487 66.9
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 3.6e-173 612.1 468 69.7
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.8e-172 609.8 466 68.7
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 4.0e-172 608.6 468 69.4
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.0e-172 608.6 469 69.5
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 2.0e-171 606.3 469 69.3
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.9e-170 602.4 492 65.7
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 8.3e-170 600.9 490 67.3
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 3.0e-167 592.4 489 66.1
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.5e-166 590.1 468 67.3
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.9e-166 589.7 532 63.7
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.1e-164 583.9 468 66.7
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.0e-163 579.7 470 66.6
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 4.9e-162 575.1 466 66.5
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.4e-161 572.8 474 66.2
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.4e-161 572.8 522 61.1
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 5.4e-161 571.6 497 63.8
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.2e-160 570.5 480 64.8
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 3.5e-160 568.9 509 61.5
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.6e-157 560.1 479 63.7
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 3.1e-156 555.8 500 60.6
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 4.4e-155 552.0 504 60.7
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 3.8e-154 548.9 508 61.2
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.9e-154 548.5 462 65.8
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 6.4e-154 548.1 467 64.0
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 9.3e-153 544.3 442 68.3
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 9.3e-153 544.3 491 62.9
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 4.6e-152 542.0 479 62.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.0e-151 539.3 476 64.5
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.9e-151 538.9 469 63.1
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 6.6e-151 538.1 477 64.8
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.8e-149 532.7 477 64.4
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 3.6e-149 532.3 476 63.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 3.1e-148 529.3 485 63.1
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 4.0e-148 528.9 478 64.0
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.0e-148 528.9 464 63.4
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 6.9e-148 528.1 477 61.4
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 3.4e-147 525.8 545 58.9
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 4.4e-147 525.4 479 64.7
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 2.2e-146 523.1 504 57.7
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 2.9e-146 522.7 481 63.4
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.1e-145 520.8 545 58.2
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 2.1e-144 516.5 480 63.8
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 2.7e-144 516.2 368 72.8
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.3e-143 513.8 516 57.0
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 3.9e-143 512.3 534 55.1
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 3.9e-143 512.3 494 58.5
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.1e-140 504.2 351 74.1
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.4e-140 503.8 489 60.1
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 4.0e-140 502.3 477 59.7
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.6e-139 499.6 419 65.9
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 5.8e-139 498.4 488 60.9
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 6.4e-138 495.0 350 72.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.7e-136 489.6 481 56.3
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 6.0e-136 488.4 488 59.4
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 3.0e-135 486.1 510 56.9
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 4.3e-134 482.3 468 58.1
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 9.0e-132 474.6 555 51.4
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.6e-125 453.8 558 50.4
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.6e-125 453.8 479 58.9
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.4e-124 449.9 317 73.8
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.2e-123 447.6 440 59.5
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 2.0e-123 446.8 487 55.6
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.9e-121 440.3 515 51.5
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.5e-121 438.7 519 51.3
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.6e-120 437.2 474 54.9
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 6.1e-120 435.3 321 70.7
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.2e-115 421.0 434 56.7
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 8.2e-101 371.7 258 77.5
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.4e-79 301.2 355 49.0
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.2e-72 278.1 215 66.5
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 7.5e-70 268.9 221 66.1
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.2e-69 267.3 173 74.6
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.9e-69 266.9 221 65.6
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.8e-68 264.2 259 58.7
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.7e-66 257.7 269 56.1
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 2.3e-66 257.3 220 64.5
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 7.3e-65 252.3 488 37.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.3e-53 212.2 499 34.9
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.2e-51 208.4 366 38.8
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.6e-50 202.6 465 33.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.8e-47 192.6 446 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.1e-44 183.3 505 33.1
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 7.6e-38 162.5 180 51.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 8.4e-37 159.1 492 32.9
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.7e-34 151.4 128 63.3
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.3e-32 145.2 472 30.5
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.6e-32 144.8 164 53.7
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.1e-31 142.1 483 30.8
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.1e-28 132.1 137 55.5
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 6.0e-27 126.3 453 29.4
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.9e-26 123.6 116 58.6
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 3.0e-18 97.4 81 64.2
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 2.3e-10 71.2 73 54.8
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 3.3e-09 67.4 62 58.1
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 3.3e-09 67.4 62 58.1
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.8e-08 63.5 91 50.5
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.4e-06 57.4 210 30.5


User provided reference genes

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