Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023294m.g Citrus clementina HOM05D003131 ORTHO05D152513 1.2e-22 109.0 56 100.0
CDE05G1183 Ceratophyllum demersum HOM05D003131 ORTHO05D003761 8.3e-08 59.7 43 74.4
ECA236G2341 Erigeron canadensis HOM05D003131 ORTHO05D003761 1.1e-07 59.3 43 72.1
Ciclev10008134m.g Citrus clementina HOM05D003131 ORTHO05D003761 1.4e-07 58.9 43 74.4
Phvul.011G139400 Phaseolus vulgaris HOM05D003131 ORTHO05D003761 1.4e-07 58.9 43 72.1
PGR031G0436 Punica granatum HOM05D003131 ORTHO05D003761 1.4e-07 58.9 43 74.4
arahy.Tifrunner.gnm1.ann1.B15YH7 Arachis hypogaea HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 72.1
arahy.Tifrunner.gnm1.ann1.E892WZ Arachis hypogaea HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 72.1
Migut.M01796 Erythranthe guttata HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 69.8
Lj3g0017739 Lotus japonicus HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 72.1
Lalb_Chr01g0006071 Lupinus albus HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 72.1
Nitab4.5_0003452g0020 Nicotiana tabacum HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 69.8
Peaxi162Scf00450g00865 Petunia axillaris HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 69.8
SHI17364 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-07 58.5 43 76.7
HPP92_015947 Vanilla planifolia HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 74.4
HPP92_015952 Vanilla planifolia HOM05D003131 ORTHO05D003761 1.9e-07 58.5 43 74.4
ClCG05G014630 Citrullus lanatus HOM05D003131 ORTHO05D003761 2.4e-07 58.2 43 69.8
Lsat_1_v5_gn_7_108961 Lactuca sativa HOM05D003131 ORTHO05D003761 2.4e-07 58.2 43 69.8
Sed0015465 Sechium edule HOM05D003131 ORTHO05D003761 2.4e-07 58.2 43 69.8
Aqoxy4G01971 Aquilegia oxysepala HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 69.8
MSTRG.15165 Avicennia marina HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 69.8
CANSAT11G2205 Cannabis sativa HOM05D003131 ORTHO05D003761 3.2e-07 57.8 38 81.6
MELO3C018096.2 Cucumis melo HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 69.8
CsaV3_3G023160 Cucumis sativus L. HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 69.8
Glyma.06G270200 Glycine max HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 69.8
HanXRQChr11g0337911 Helianthus annuus HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 74.4
Nn1g07062 Nelumbo nucifera HOM05D003131 ORTHO05D003761 3.2e-07 57.8 43 72.1
AL1G58680 Arabidopsis lyrata HOM05D003131 ORTHO05D003761 4.1e-07 57.4 43 67.4
AL7G25720 Arabidopsis lyrata HOM05D003131 ORTHO05D003761 4.1e-07 57.4 35 85.7
AT4G27080 Arabidopsis thaliana HOM05D003131 ORTHO05D003761 4.1e-07 57.4 35 85.7
Carub.0001s3989 Capsella rubella HOM05D003131 ORTHO05D003761 4.1e-07 57.4 43 67.4
CAN.G337.99 Capsicum annuum HOM05D003131 ORTHO05D003761 4.1e-07 57.4 43 67.4
Lj3g0001988 Lotus japonicus HOM05D003131 ORTHO05D003761 4.1e-07 57.4 43 69.8
MBI02_g23958_MAGBIO Magnolia biondii HOM05D003131 ORTHO05D003761 4.1e-07 57.4 43 69.8
THA.LOC104812532 Tarenaya hassleriana HOM05D003131 ORTHO05D003761 4.1e-07 57.4 43 69.8
TWI39G0275 Tripterygium wilfordii HOM05D003131 ORTHO05D003761 4.1e-07 57.4 35 85.7
arahy.Tifrunner.gnm1.ann1.FX4D46 Arachis hypogaea HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 72.1
BcaB07g33537 Brassica carinata HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
BcaC08g43268 Brassica carinata HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
A06p02790 Brassica napus HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
C06p06160 Brassica napus HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
BolC6t35727H Brassica oleracea HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
BraA06t23486Z Brassica rapa HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
CiPaw.11G185300 Carya illinoinensis HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Duzib170G1176 Durio zibethinus HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Gohir.A04G020700 Gossypium hirsutum HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Gohir.D05G366000 Gossypium hirsutum HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Gorai.009G426100 Gossypium raimondii HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Lalb_Chr14g0366231 Lupinus albus HOM05D003131 ORTHO05D003761 5.4e-07 57.0 35 82.9
Os07g0524100 Oryza sativa ssp. japonica HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Pp3c14_18940 Physcomitrium patens HOM05D003131 ORTHO05D003761 5.4e-07 57.0 38 81.6
Psat7g162480 Pisum sativum HOM05D003131 ORTHO05D003761 5.4e-07 57.0 35 82.9
Sp1g37690 Schrenkiella parvula HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 67.4
Sc16g0006370 Simmondsia chinensis HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 72.1
PGSC0003DMG400001047 Solanum tuberosum HOM05D003131 ORTHO05D003761 5.4e-07 57.0 35 82.9
GSVIVG01001983001 Vitis vinifera HOM05D003131 ORTHO05D003761 5.4e-07 57.0 35 82.9
Zm00001eb106180 Zea mays HOM05D003131 ORTHO05D003761 5.4e-07 57.0 43 69.8
Aa31LG8G7370 Aethionema arabicum HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 65.1
AL3G34420 Arabidopsis lyrata HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 67.4
AT1G50950 Arabidopsis thaliana HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
AT3G20560 Arabidopsis thaliana HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 67.4
BcaC06g32712 Brassica carinata HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
A03p57070 Brassica napus HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
A05p19840 Brassica napus HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 67.4
C07p55000 Brassica napus HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
BolC7t46012H Brassica oleracea HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
BraA03t14777Z Brassica rapa HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
BraA05t20889Z Brassica rapa HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 67.4
CARHR234730 Cardamine hirsuta HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
Ciclev10023649m.g Citrus clementina HOM05D003131 ORTHO05D002186 7.0e-07 56.6 30 100.0
Cc05_g13370 Coffea canephora HOM05D003131 ORTHO05D003761 7.0e-07 56.6 38 78.9
Thhalv10025074m.g Eutrema salsugineum HOM05D003131 ORTHO05D003761 7.0e-07 56.6 35 82.9
Glyma.12G134500 Glycine max HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 69.8
Glyma.13G288600 Glycine max HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 67.4
Potri.011G135500 Populus trichocarpa HOM05D003131 ORTHO05D003761 7.0e-07 56.6 38 76.3
Sabra11G0121200 Salix brachista HOM05D003131 ORTHO05D003761 7.0e-07 56.6 38 76.3
Sabra16G0284800 Salix brachista HOM05D003131 ORTHO05D003761 7.0e-07 56.6 38 76.3
Thecc.07G050200 Theobroma cacao HOM05D003131 ORTHO05D003761 7.0e-07 56.6 43 67.4
Atru.chr2.3237 Acer truncatum HOM05D003131 ORTHO05D003761 9.2e-07 56.2 35 82.9
Actinidia35326 Actinidia chinensis HOM05D003131 ORTHO05D003761 9.2e-07 56.2 38 76.3
CSS0010531 Camellia sinensis var. sinensis HOM05D003131 ORTHO05D003761 9.2e-07 56.2 38 76.3
Carub.0003s2054 Capsella rubella HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
Cfa020401 Carpinus fangiana HOM05D003131 ORTHO05D003761 9.2e-07 56.2 35 80.0
Thhalv10011436m.g Eutrema salsugineum HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 65.1
FvH4_3g21990 Fragaria vesca HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
FAN11G1541 Fragaria x ananassa HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
FAN16G2989 Fragaria x ananassa HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
FAN21G2752 Fragaria x ananassa HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
FAN25G0818 Fragaria x ananassa HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
Gohir.A13G140500 Gossypium hirsutum HOM05D003131 ORTHO05D003761 9.2e-07 56.2 35 82.9
MD03G1209500 Malus domestica HOM05D003131 ORTHO05D003761 9.2e-07 56.2 35 82.9
MD11G1224300 Malus domestica HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
Medtr4g080800 Medicago truncatula HOM05D003131 ORTHO05D003761 9.2e-07 56.2 38 76.3
Phvul.005G092800 Phaseolus vulgaris HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 69.8
Potri.001G419300 Populus trichocarpa HOM05D003131 ORTHO05D003761 9.2e-07 56.2 38 76.3
Prupe.4G205600 Prunus persica HOM05D003131 ORTHO05D003761 9.2e-07 56.2 35 82.9
RcHm_v2.0_Chr5g0037841 Rosa chinensis HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 67.4
VMungo1127G1954 Vigna mungo HOM05D003131 ORTHO05D003761 9.2e-07 56.2 43 69.8
Aa31LG5G10320 Aethionema arabicum HOM05D003131 ORTHO05D003761 1.2e-06 55.8 31 90.3
MSTRG.6898 Avicennia marina HOM05D003131 ORTHO05D003761 1.2e-06 55.8 35 82.9
EL10Ac4g07936 Beta vulgaris HOM05D003131 ORTHO05D003761 1.2e-06 55.8 43 67.4
Lj1A867T32 Lonicera japonica HOM05D003131 ORTHO05D003761 1.2e-06 55.8 30 96.7
Medtr2g083260 Medicago truncatula HOM05D003131 ORTHO05D003761 1.2e-06 55.8 35 80.0
QL08p012668 Quercus lobata HOM05D003131 ORTHO05D003761 1.2e-06 55.8 35 80.0
THA.LOC104817882 Tarenaya hassleriana HOM05D003131 ORTHO05D003761 1.2e-06 55.8 35 80.0
TAR627G1168 Trochodendron aralioides HOM05D003131 ORTHO05D003761 1.2e-06 55.8 30 96.7
vmacro09740 Vaccinium macrocarpon HOM05D003131 ORTHO05D003761 1.2e-06 55.8 38 76.3
vmacro11756 Vaccinium macrocarpon HOM05D003131 ORTHO05D003761 1.2e-06 55.8 38 76.3
BcaB02g11198 Brassica carinata HOM05D003131 ORTHO05D003761 1.6e-06 55.5 43 62.8
BcaB03g12526 Brassica carinata HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 82.9
BcaC07g38270 Brassica carinata HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 82.9
A08p20550 Brassica napus HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 82.9
C08p10170 Brassica napus HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 82.9
BolC8t48696H Brassica oleracea HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 82.9
BraA08t34011Z Brassica rapa HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 82.9
CARHR096350 Cardamine hirsuta HOM05D003131 ORTHO05D003761 1.6e-06 55.5 43 65.1
Ca_18858_v3 Cicer arietinum L. HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 80.0
Duzib213G0427 Durio zibethinus HOM05D003131 ORTHO05D003761 1.6e-06 55.5 43 65.1
Duzib268G0498 Durio zibethinus HOM05D003131 ORTHO05D003761 1.6e-06 55.5 43 67.4
Psat5g252160 Pisum sativum HOM05D003131 ORTHO05D003761 1.6e-06 55.5 35 80.0
Ah.06g182980 Amaranthus hybridus HOM05D003131 ORTHO05D003761 2.1e-06 55.1 43 67.4
C05p33100 Brassica napus HOM05D003131 ORTHO05D003761 2.1e-06 55.1 43 62.8
BolC5t32042H Brassica oleracea HOM05D003131 ORTHO05D003761 2.1e-06 55.1 43 62.8
Dinv40726 Davidia involucrata HOM05D003131 ORTHO05D003761 2.1e-06 55.1 35 77.1
Lalb_Chr19g0134801 Lupinus albus HOM05D003131 ORTHO05D003761 2.1e-06 55.1 38 76.3
Manes.03G127900 Manihot esculenta HOM05D003131 ORTHO05D003761 2.1e-06 55.1 43 69.8
Oeu062607.1 Olea europaea HOM05D003131 ORTHO05D003761 2.1e-06 55.1 35 80.0
PSO675G8799 Papaver somniferum HOM05D003131 ORTHO05D003761 2.1e-06 55.1 35 82.9
Hund23293 Selenicereus undatus HOM05D003131 ORTHO05D003761 2.1e-06 55.1 43 65.1
Solyc07g064250.3 Solanum lycopersicum HOM05D003131 ORTHO05D003761 2.1e-06 55.1 35 80.0
Sopen07g032400 Solanum pennellii HOM05D003131 ORTHO05D003761 2.1e-06 55.1 35 80.0
SGA_v2.0_scaffold9G05050 Striga asiatica HOM05D003131 ORTHO05D003761 2.1e-06 55.1 35 80.0
TPR.G25904 Trifolium pratense HOM05D003131 ORTHO05D003761 2.1e-06 55.1 38 73.7
Gohir.D13G145300 Gossypium hirsutum HOM05D003131 ORTHO05D003761 2.7e-06 54.7 35 80.0
TWI38G0096 Tripterygium wilfordii HOM05D003131 ORTHO05D003761 2.7e-06 54.7 35 80.0
unitig_0.g755 Utricularia gibba HOM05D003131 ORTHO05D003761 2.7e-06 54.7 31 90.3
Actinidia09927 Actinidia chinensis HOM05D003131 ORTHO05D003761 3.5e-06 54.3 38 73.7
arahy.Tifrunner.gnm1.ann1.78MI69 Arachis hypogaea HOM05D003131 ORTHO05D003761 3.5e-06 54.3 30 93.3
CARHR040990 Cardamine hirsuta HOM05D003131 ORTHO05D003761 3.5e-06 54.3 43 62.8
Eucgr.F03438 Eucalyptus grandis HOM05D003131 ORTHO05D003761 3.5e-06 54.3 33 81.8
Gorai.013G163100 Gossypium raimondii HOM05D003131 ORTHO05D003761 3.5e-06 54.3 35 80.0
HanXRQChr03g0077341 Helianthus annuus HOM05D003131 ORTHO05D003761 3.5e-06 54.3 43 62.8
SMO239G0034 Selaginella moellendorffii HOM05D003131 ORTHO05D003761 3.5e-06 54.3 35 80.0
A03p41810 Brassica napus HOM05D003131 ORTHO05D003761 4.6e-06 53.9 43 65.1
Oeu032446.3 Olea europaea HOM05D003131 ORTHO05D003761 4.6e-06 53.9 35 80.0
PSO541G2817 Papaver somniferum HOM05D003131 ORTHO05D003761 4.6e-06 53.9 35 80.0
RhsimUnG0252300 Rhododendron simsii HOM05D003131 ORTHO05D003761 4.6e-06 53.9 30 90.0
TPR.G19970 Trifolium pratense HOM05D003131 ORTHO05D003761 4.6e-06 53.9 30 90.0
ATR0697G255 Amborella trichopoda HOM05D003131 ORTHO05D003761 6.0e-06 53.5 35 80.0
Thhalv10020619m.g Eutrema salsugineum HOM05D003131 ORTHO05D003761 6.0e-06 53.5 43 62.8
Sp3g18580 Schrenkiella parvula HOM05D003131 ORTHO05D003761 6.0e-06 53.5 43 62.8
VMungo1080G0160 Vigna mungo HOM05D003131 ORTHO05D003761 6.0e-06 53.5 34 82.4
BcaB04g19114 Brassica carinata HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 62.8
BcaB06g26121 Brassica carinata HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 65.1
BcaC05g28315 Brassica carinata HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 65.1
A05p28280 Brassica napus HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 65.1
C05p43760 Brassica napus HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 65.1
BolC5t33092H Brassica oleracea HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 65.1
BraA05t21710Z Brassica rapa HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 65.1
DCAR_010029 Daucus carota HOM05D003131 ORTHO05D003761 7.8e-06 53.1 43 62.8


User provided reference genes

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