Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.2e-25 119.4 74 100.0
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 5.4e-23 110.5 74 89.2
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 3.5e-22 107.8 74 86.5
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 6.0e-22 107.1 74 86.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.3e-21 105.9 74 82.4
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.7e-21 105.5 72 83.3
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.7e-21 105.5 74 83.8
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 3.9e-21 104.4 72 77.8
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 3.9e-21 104.4 74 82.4
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 5.1e-21 104.0 74 83.8
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 5.1e-21 104.0 74 81.1
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 5.1e-21 104.0 73 86.3
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 6.6e-21 103.6 74 85.1
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 6.6e-21 103.6 73 83.6
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 6.6e-21 103.6 74 82.4
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 8.7e-21 103.2 74 83.8
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 79.7
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.5e-20 102.4 71 84.5
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 86.5
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 86.5
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.5e-20 101.7 74 82.4
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.5e-20 101.7 74 74.3
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.3e-20 101.3 71 84.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.3e-20 101.3 71 84.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.3e-20 101.3 71 84.5
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 5.6e-20 100.5 71 83.1
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 7.3e-20 100.1 74 82.4
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 7.3e-20 100.1 74 73.0
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 9.6e-20 99.8 71 84.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.6e-20 99.8 71 84.5
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 9.6e-20 99.8 74 79.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 9.6e-20 99.8 74 77.0
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.3e-19 99.4 71 80.3
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 79.7
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 71.6
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.1e-19 98.6 74 79.7
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 2.8e-19 98.2 69 81.2
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 2.8e-19 98.2 74 82.4
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 2.8e-19 98.2 74 83.8
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.6e-19 97.8 74 81.1
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 3.6e-19 97.8 73 82.2
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 4.8e-19 97.4 74 71.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 4.8e-19 97.4 68 85.3
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 6.2e-19 97.1 74 74.3
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 6.2e-19 97.1 74 74.3
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.1e-18 96.3 74 81.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 1.1e-18 96.3 74 82.4
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 1.1e-18 96.3 74 82.4
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.4e-18 95.9 72 68.1
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.4e-18 95.9 74 83.8
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.8e-18 95.5 71 81.7
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 4.0e-18 94.4 70 82.9
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 75.7
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 71.6
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 6.9e-18 93.6 71 76.1
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 6.9e-18 93.6 71 76.1
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.9e-18 93.6 71 81.7
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 73.0
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 79.7
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 79.7
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 79.7
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 74.3
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.2e-17 92.8 70 80.0
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.2e-17 92.8 73 79.5
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.2e-17 92.8 72 81.9
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.2e-17 92.8 71 73.2
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.2e-17 92.8 71 73.2
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.5e-17 92.4 74 70.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.0e-17 92.0 71 74.6
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 2.0e-17 92.0 82 75.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 2.6e-17 91.7 75 80.0
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.6e-17 91.7 71 71.8
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 3.4e-17 91.3 73 71.2
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 3.4e-17 91.3 71 78.9
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 4.5e-17 90.9 73 68.5
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 5.8e-17 90.5 76 81.6
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 5.8e-17 90.5 74 64.9
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 9.9e-17 89.7 74 67.6
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.3e-16 89.4 74 75.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.7e-16 89.0 71 76.1
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.2e-16 88.6 76 69.7
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 2.2e-16 88.6 73 67.1
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 3.8e-16 87.8 74 74.3
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.8e-16 87.8 67 80.6
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 4.9e-16 87.4 74 74.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 4.9e-16 87.4 71 64.8
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 8.4e-16 86.7 74 68.9
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 8.4e-16 86.7 77 70.1
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.4e-15 85.9 74 73.0
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.4e-15 85.9 71 64.8
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.4e-15 85.9 75 74.7
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 70.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 70.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 70.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 70.8
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 2.4e-15 85.1 71 69.0
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 3.2e-15 84.7 71 78.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 3.2e-15 84.7 71 69.0
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 70.8
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 70.8
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 5.4e-15 84.0 71 64.8
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 70.8
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.4e-15 84.0 71 73.2
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 5.4e-15 84.0 71 73.2
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 9.3e-15 83.2 71 67.6
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.2e-14 82.8 74 74.3
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.6e-14 82.4 71 73.2
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.6e-14 82.4 76 68.4
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 2.1e-14 82.0 75 74.7
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.1e-14 82.0 69 75.4
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 48 85.4
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 70.3
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 74.3
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 3.5e-14 81.3 70 71.4
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 3.5e-14 81.3 70 71.4
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 3.5e-14 81.3 70 71.4
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 3.5e-14 81.3 70 71.4
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.8e-13 79.0 71 73.2
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.3e-13 78.6 75 72.0
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 2.3e-13 78.6 71 80.3
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.0e-13 78.2 65 76.9
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 3.0e-13 78.2 128 50.0
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 3.9e-13 77.8 71 76.1
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 5.1e-13 77.4 74 67.6
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 8.7e-13 76.6 68 63.2
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 8.7e-13 76.6 73 64.4
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 73.0
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.9e-12 75.5 73 68.5
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 2.5e-12 75.1 47 78.7
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.5e-12 75.1 69 75.4
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 3.3e-12 74.7 46 80.4
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.3e-12 74.7 65 75.4
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 7.4e-12 73.6 74 70.3
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 9.6e-12 73.2 74 67.6
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 9.6e-12 73.2 74 70.3
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 1.3e-11 72.8 71 66.2
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 1.6e-11 72.4 68 60.3
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 2.1e-11 72.0 60 76.7
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 2.1e-11 72.0 77 67.5
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.8e-11 71.6 125 49.6
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 8.1e-11 70.1 74 67.6
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 57.7
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.4e-10 69.3 77 70.1
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.4e-10 69.3 74 62.2
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 2.4e-10 68.6 69 68.1
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 4.0e-10 67.8 80 53.8
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 4.0e-10 67.8 72 59.7
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 6.9e-10 67.0 45 71.1
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.2e-09 66.2 66 69.7
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.2e-09 66.2 45 71.1
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 1.5e-09 65.9 77 67.5
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 1.5e-09 65.9 77 55.8
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 4.5e-09 64.3 71 63.4
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 5.8e-09 63.9 69 68.1
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 5.8e-09 63.9 72 69.4
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.2e-08 62.0 114 44.7
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.9e-08 61.6 68 64.7
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 2.9e-08 61.6 68 64.7
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 2.9e-08 61.6 64 54.7
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 3.8e-08 61.2 72 68.1
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 3.8e-08 61.2 72 68.1
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 4.9e-08 60.8 93 55.9
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 4.9e-08 60.8 65 61.5
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 6.5e-08 60.5 70 68.6
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 6.5e-08 60.5 116 47.4
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 6.5e-08 60.5 49 59.2
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 6.5e-08 60.5 64 64.1
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 8.4e-08 60.1 71 60.6
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.4e-07 59.3 49 65.3
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 1.4e-07 59.3 49 65.3
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.4e-07 59.3 61 65.6
DCAR_016492 Daucus carota HOM05D003549 ORTHO05D004223 7.1e-07 57.0 76 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 9.3e-07 56.6 71 50.7
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 9.3e-07 56.6 70 55.7
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 1.2e-06 56.2 72 61.1
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.1e-06 55.5 116 44.0
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.1e-06 55.5 69 60.9
Haze_18696 Corylus avellana HOM05D003549 ORTHO05D004223 6.0e-06 53.9 30 86.7


User provided reference genes

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