Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 6.1e-36 153.7 80 100.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.1e-26 122.9 80 81.2
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 4.3e-26 120.9 78 79.5
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 6.3e-25 117.1 80 77.5
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.1e-24 116.3 80 76.2
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 2.4e-24 115.2 80 75.0
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.4e-24 115.2 80 75.0
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.4e-24 115.2 80 75.0
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.4e-24 115.2 80 75.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-23 112.8 79 73.4
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.2e-23 112.8 59 94.9
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 2.0e-23 112.1 80 71.2
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 3.4e-23 111.3 76 77.6
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 4.5e-23 110.9 80 73.8
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.3e-22 109.4 71 77.5
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 2.2e-22 108.6 80 72.5
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 2.2e-22 108.6 80 70.0
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.9e-22 108.2 80 70.0
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.9e-22 108.2 82 69.5
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.8e-22 107.8 71 77.5
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.8e-22 107.8 80 70.0
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 3.8e-22 107.8 60 88.3
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 8.5e-22 106.7 80 70.0
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 1.1e-21 106.3 63 81.0
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 1.9e-21 105.5 71 76.1
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.9e-21 105.5 75 66.7
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 3.2e-21 104.8 80 68.8
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 4.2e-21 104.4 80 68.8
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 5.5e-21 104.0 76 71.1
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 7.2e-21 103.6 81 70.4
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 7.2e-21 103.6 80 67.5
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 9.4e-21 103.2 77 70.1
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 9.4e-21 103.2 76 64.5
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 1.2e-20 102.8 80 67.5
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.2e-20 102.8 76 71.1
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.2e-20 102.8 80 66.2
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.6e-20 102.4 80 66.2
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 1.6e-20 102.4 59 84.7
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.6e-20 102.4 80 68.8
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 2.1e-20 102.1 60 85.0
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.7e-20 100.9 80 65.0
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 4.7e-20 100.9 60 81.7
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 6.1e-20 100.5 80 67.5
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.0e-19 99.8 85 60.0
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.0e-19 99.8 80 67.5
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.8e-19 99.0 62 77.4
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 1.8e-19 99.0 78 67.9
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 2.3e-19 98.6 76 65.8
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 2.3e-19 98.6 80 65.0
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 2.3e-19 98.6 80 65.0
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 3.0e-19 98.2 80 63.8
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 3.0e-19 98.2 80 65.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.9e-19 97.8 76 64.5
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 3.9e-19 97.8 78 64.1
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 3.9e-19 97.8 60 80.0
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 5.1e-19 97.4 63 77.8
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 5.1e-19 97.4 78 64.1
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 5.1e-19 97.4 80 65.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 5.1e-19 97.4 80 66.2
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 6.7e-19 97.1 59 79.7
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 6.7e-19 97.1 59 79.7
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 6.7e-19 97.1 59 79.7
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 6.7e-19 97.1 59 79.7
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-19 97.1 116 51.7
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 6.7e-19 97.1 80 63.8
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 8.8e-19 96.7 73 71.2
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 2.6e-18 95.1 60 76.7
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 4.4e-18 94.4 80 62.5
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 4.4e-18 94.4 85 62.4
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 5.7e-18 94.0 66 69.7
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 9.7e-18 93.2 62 72.6
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 9.7e-18 93.2 78 61.5
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 1.3e-17 92.8 80 63.8
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.7e-17 92.4 80 60.0
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.2e-17 92.0 110 52.7
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 2.8e-17 91.7 62 71.0
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.7e-17 91.3 81 61.7
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.8e-17 90.9 81 60.5
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 8.2e-17 90.1 81 61.7
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 8.2e-17 90.1 73 60.3
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 1.8e-16 89.0 78 64.1
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 1.8e-16 89.0 78 62.8
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-15 86.3 63 61.9
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 1.3e-14 82.8 63 58.7
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-14 82.4 80 58.8
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 3.8e-14 81.3 152 38.8
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 8.5e-14 80.1 80 51.2
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 4.7e-12 74.3 42 81.0
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 8.0e-12 73.6 77 54.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.7e-11 70.5 59 57.6
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 8.8e-11 70.1 42 78.6
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 8.8e-11 70.1 135 38.5
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.7e-10 67.4 55 58.2
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 2.2e-09 65.5 47 61.7
Glyma.07G072000 Glycine max HOM05D007705 ORTHO05D009720 2.2e-06 55.5 35 71.4


User provided reference genes

Program Settings