Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023015m.g Citrus clementina HOM05D006678 ORTHO05D008388 2.4e-53 211.8 103 100.0
Atru.chr12.1964 Acer truncatum HOM05D006678 ORTHO05D008388 7.5e-47 190.3 104 88.5
Thecc.05G213400 Theobroma cacao HOM05D006678 ORTHO05D008388 6.4e-46 187.2 101 87.1
CiPaw.06G032600 Carya illinoinensis HOM05D006678 ORTHO05D008388 8.3e-46 186.8 103 86.4
Manes.09G127100 Manihot esculenta HOM05D006678 ORTHO05D008388 1.9e-45 185.7 103 83.5
MELO3C024729.2 Cucumis melo HOM05D006678 ORTHO05D008388 2.4e-45 185.3 104 84.6
Duzib106G0454 Durio zibethinus HOM05D006678 ORTHO05D008388 2.4e-45 185.3 101 85.1
QL09p024031 Quercus lobata HOM05D006678 ORTHO05D008388 5.4e-45 184.1 102 84.3
Duzib177G0619 Durio zibethinus HOM05D006678 ORTHO05D008388 9.2e-45 183.3 101 84.2
Gohir.D13G161000 Gossypium hirsutum HOM05D006678 ORTHO05D008388 1.6e-44 182.6 101 85.1
Gorai.013G181600 Gossypium raimondii HOM05D006678 ORTHO05D008388 1.6e-44 182.6 101 85.1
MD01G1236000 Malus domestica HOM05D006678 ORTHO05D008388 3.5e-44 181.4 104 85.6
ClCG02G007680 Citrullus lanatus HOM05D006678 ORTHO05D008388 4.6e-44 181.0 104 81.7
COL.COLO4_11805 Corchorus olitorius HOM05D006678 ORTHO05D008388 4.6e-44 181.0 101 83.2
CsaV3_2G036030 Cucumis sativus L. HOM05D006678 ORTHO05D008388 6.0e-44 180.6 104 82.7
Gohir.A13G156100 Gossypium hirsutum HOM05D006678 ORTHO05D008388 1.3e-43 179.5 101 83.2
FAN03G1679 Fragaria x ananassa HOM05D006678 ORTHO05D008388 3.9e-43 177.9 104 83.7
GSVIVG01024408001 Vitis vinifera HOM05D006678 ORTHO05D008388 3.9e-43 177.9 103 81.6
TAR629G1392 Trochodendron aralioides HOM05D006678 ORTHO05D008388 5.0e-43 177.6 104 81.7
Prupe.2G326100 Prunus persica HOM05D006678 ORTHO05D008388 1.1e-42 176.4 103 83.5
THA.LOC104802920 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 1.5e-42 176.0 103 81.6
CANSAT21G1467 Cannabis sativa HOM05D006678 ORTHO05D008388 2.5e-42 175.3 103 81.6
THA.LOC104827215 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 2.5e-42 175.3 103 80.6
Phvul.011G020300 Phaseolus vulgaris HOM05D006678 ORTHO05D008388 4.3e-42 174.5 104 79.8
TWI38G1314 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 4.3e-42 174.5 104 81.7
FvH4_7g33980 Fragaria vesca HOM05D006678 ORTHO05D008388 5.6e-42 174.1 104 81.7
RcHm_v2.0_Chr1g0384211 Rosa chinensis HOM05D006678 ORTHO05D008388 5.6e-42 174.1 105 83.8
Nn1g01909 Nelumbo nucifera HOM05D006678 ORTHO05D008388 7.3e-42 173.7 105 80.0
FAN10G1380 Fragaria x ananassa HOM05D006678 ORTHO05D008388 9.5e-42 173.3 104 80.8
PSO063G3868 Papaver somniferum HOM05D006678 ORTHO05D008388 9.5e-42 173.3 105 80.0
FAN01G1466 Fragaria x ananassa HOM05D006678 ORTHO05D008388 1.2e-41 172.9 104 81.7
VMungo1127G1968 Vigna mungo HOM05D006678 ORTHO05D008388 1.6e-41 172.6 104 78.8
arahy.Tifrunner.gnm1.ann1.Z69A25 Arachis hypogaea HOM05D006678 ORTHO05D008388 2.1e-41 172.2 106 80.2
PSO782G5154 Papaver somniferum HOM05D006678 ORTHO05D008388 2.1e-41 172.2 105 79.0
TWI39G0757 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 2.1e-41 172.2 104 80.8
Potri.013G082100 Populus trichocarpa HOM05D006678 ORTHO05D008388 2.8e-41 171.8 110 76.4
PGR042G1336 Punica granatum HOM05D006678 ORTHO05D008388 6.2e-41 170.6 112 76.8
Psat7g171800 Pisum sativum HOM05D006678 ORTHO05D008388 1.1e-40 169.9 106 76.4
CARHR077080 Cardamine hirsuta HOM05D006678 ORTHO05D008388 1.4e-40 169.5 111 73.9
Glyma.12G017800 Glycine max HOM05D006678 ORTHO05D008388 1.4e-40 169.5 104 78.8
Lj3g0002487 Lotus japonicus HOM05D006678 ORTHO05D008388 1.4e-40 169.5 112 75.0
Aa31LG5G13550 Aethionema arabicum HOM05D006678 ORTHO05D008388 2.3e-40 168.7 111 73.9
AT3G03070 Arabidopsis thaliana HOM05D006678 ORTHO05D008388 2.3e-40 168.7 111 73.9
Thhalv10021803m.g Eutrema salsugineum HOM05D006678 ORTHO05D008388 2.3e-40 168.7 111 73.9
Glyma.11G091800 Glycine max HOM05D006678 ORTHO05D008388 2.3e-40 168.7 106 77.4
Ca_04918_v3 Cicer arietinum L. HOM05D006678 ORTHO05D008388 4.0e-40 167.9 106 76.4
Sed0006085 Sechium edule HOM05D006678 ORTHO05D008388 4.0e-40 167.9 105 80.0
Medtr4g077807 Medicago truncatula HOM05D006678 ORTHO05D008388 5.2e-40 167.5 106 75.5
Sp3g02110 Schrenkiella parvula HOM05D006678 ORTHO05D008388 5.2e-40 167.5 112 73.2
TPR.G27187 Trifolium pratense HOM05D006678 ORTHO05D008388 5.2e-40 167.5 106 75.5
Actinidia18705 Actinidia chinensis HOM05D006678 ORTHO05D008388 6.8e-40 167.2 104 76.9
Lalb_Chr03g0024411 Lupinus albus HOM05D006678 ORTHO05D008388 6.8e-40 167.2 107 76.6
AL3G12580 Arabidopsis lyrata HOM05D006678 ORTHO05D008388 8.9e-40 166.8 111 73.0
BcaB04g21385 Brassica carinata HOM05D006678 ORTHO05D008388 1.2e-39 166.4 112 73.2
Carub.0003s0222 Capsella rubella HOM05D006678 ORTHO05D008388 2.6e-39 165.2 111 72.1
BraA01t04595Z Brassica rapa HOM05D006678 ORTHO05D008388 3.4e-39 164.9 112 71.4
BNapus_Darmor_BZH_scaffold_129p00040 Brassica napus HOM05D006678 ORTHO05D008388 7.5e-39 163.7 112 72.3
Dinv17257 Davidia involucrata HOM05D006678 ORTHO05D008388 7.5e-39 163.7 106 73.6
Sabra13G0070800 Salix brachista HOM05D006678 ORTHO05D008388 7.5e-39 163.7 113 72.6
BolC1t05850H Brassica oleracea HOM05D006678 ORTHO05D008388 9.8e-39 163.3 112 70.5
BolC5t35043H Brassica oleracea HOM05D006678 ORTHO05D008388 9.8e-39 163.3 113 70.8
Dinv29159 Davidia involucrata HOM05D006678 ORTHO05D008388 9.8e-39 163.3 106 75.5
Aqoxy3G02158 Aquilegia oxysepala HOM05D006678 ORTHO05D008388 1.3e-38 162.9 81 91.4
C05p63740 Brassica napus HOM05D006678 ORTHO05D008388 1.7e-38 162.5 113 70.8
Actinidia34306 Actinidia chinensis HOM05D006678 ORTHO05D008388 2.9e-38 161.8 106 74.5
Rhsim03G0221400 Rhododendron simsii HOM05D006678 ORTHO05D008388 2.9e-38 161.8 107 72.9
A05p44110 Brassica napus HOM05D006678 ORTHO05D008388 3.7e-38 161.4 113 69.9
BraSC90t46700Z Brassica rapa HOM05D006678 ORTHO05D008388 3.7e-38 161.4 113 69.9
Oeu031704.1 Olea europaea HOM05D006678 ORTHO05D008388 3.7e-38 161.4 107 76.6
DCAR_009010 Daucus carota HOM05D006678 ORTHO05D008388 4.9e-38 161.0 113 70.8
Lalb_Chr01g0000921 Lupinus albus HOM05D006678 ORTHO05D008388 6.4e-38 160.6 103 74.8
Nitab4.5_0011186g0030 Nicotiana tabacum HOM05D006678 ORTHO05D008388 6.4e-38 160.6 106 72.6
HanXRQChr03g0088421 Helianthus annuus HOM05D006678 ORTHO05D008388 8.3e-38 160.2 106 74.5
Nitab4.5_0000021g0500 Nicotiana tabacum HOM05D006678 ORTHO05D008388 8.3e-38 160.2 106 72.6
Peaxi162Scf00133g00723 Petunia axillaris HOM05D006678 ORTHO05D008388 4.1e-37 157.9 105 74.3
vmacro06510 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 4.1e-37 157.9 114 68.4
MSTRG.26930 Avicennia marina HOM05D006678 ORTHO05D008388 5.4e-37 157.5 97 75.3
Gorai.013G182200 Gossypium raimondii HOM05D006678 ORTHO05D008388 7.0e-37 157.1 101 75.2
Lsat_1_v5_gn_9_47480 Lactuca sativa HOM05D006678 ORTHO05D008388 7.0e-37 157.1 105 73.3
Hund09791 Selenicereus undatus HOM05D006678 ORTHO05D008388 1.6e-36 156.0 104 72.1
ATR0829G044 Amborella trichopoda HOM05D006678 ORTHO05D008388 2.1e-36 155.6 94 76.6
SGA_v2.0_scaffold50G18440 Striga asiatica HOM05D006678 ORTHO05D008388 2.7e-36 155.2 105 71.4
unitig_90.g27534 Utricularia gibba HOM05D006678 ORTHO05D008388 2.7e-36 155.2 105 70.5
CSS0031072 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 3.5e-36 154.8 115 68.7
Solyc03g097010.3 Solanum lycopersicum HOM05D006678 ORTHO05D008388 3.5e-36 154.8 106 74.5
Sopen03g027760 Solanum pennellii HOM05D006678 ORTHO05D008388 3.5e-36 154.8 106 74.5
CSS0016806 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 1.3e-35 152.9 121 65.3
Migut.F00948 Erythranthe guttata HOM05D006678 ORTHO05D008388 1.7e-35 152.5 105 69.5
CDE03G0140 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 5.1e-35 151.0 99 73.7
Hma1.2p1_1680F.1_g297200 Hydrangea macrophylla HOM05D006678 ORTHO05D008388 1.9e-34 149.1 107 69.2
CDE06G2089 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 3.3e-34 148.3 97 71.1
EL10Ac3g05077 Beta vulgaris HOM05D006678 ORTHO05D008388 5.6e-34 147.5 103 71.8
Cc02_g00280 Coffea canephora HOM05D006678 ORTHO05D008388 9.5e-34 146.7 114 68.4
AUR62028176 Chenopodium quinoa HOM05D006678 ORTHO05D008388 6.2e-33 144.1 103 68.9
AUR62002062 Chenopodium quinoa HOM05D006678 ORTHO05D008388 2.3e-32 142.1 103 68.9
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 2.3e-32 142.1 66 97.0
SalBow2G2234 Salvia bowleyana HOM05D006678 ORTHO05D008388 2.3e-32 142.1 105 66.7
Oeu063732.2 Olea europaea HOM05D006678 ORTHO05D008388 9.9e-31 136.7 160 51.9
CAN.G1131.11 Capsicum annuum HOM05D006678 ORTHO05D008388 3.7e-30 134.8 66 89.4
vmacro22173 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 1.1e-29 133.3 64 93.8
Zm00001eb172200 Zea mays HOM05D006678 ORTHO05D008388 1.9e-29 132.5 101 63.4
Os08g0161700 Oryza sativa ssp. japonica HOM05D006678 ORTHO05D008388 3.2e-29 131.7 91 65.9
Duzib128G0155 Durio zibethinus HOM05D006678 ORTHO05D008388 7.1e-29 130.6 77 76.6
Nitab4.5_0000011g0100 Nicotiana tabacum HOM05D006678 ORTHO05D008388 2.1e-28 129.0 65 89.2
AagrBONN_evm.TU.Sc2ySwM_368.1248 Anthoceros agrestis HOM05D006678 ORTHO05D008388 1.3e-27 126.3 104 55.8
ECA232G0519 Erigeron canadensis HOM05D006678 ORTHO05D008388 5.1e-27 124.4 93 68.8
SEGI_28569 Sequoiadendron giganteum HOM05D006678 ORTHO05D008388 6.6e-27 124.0 64 85.9
SMO239G0055 Selaginella moellendorffii HOM05D006678 ORTHO05D008388 1.1e-26 123.2 72 72.2
Mapoly0006s0269 Marchantia polymorpha HOM05D006678 ORTHO05D008388 1.5e-26 122.9 73 72.6
Pp3c24_2620 Physcomitrium patens HOM05D006678 ORTHO05D008388 1.2e-25 119.8 87 64.4
Ah.13g072760 Amaranthus hybridus HOM05D006678 ORTHO05D008388 3.1e-24 115.2 92 68.5
Pp3c23_13320 Physcomitrium patens HOM05D006678 ORTHO05D008388 8.4e-22 107.1 73 67.1
Gohir.D13G160300 Gossypium hirsutum HOM05D006678 ORTHO05D008388 9.2e-21 103.6 66 80.3
arahy.Tifrunner.gnm1.ann1.GV73NI Arachis hypogaea HOM05D006678 ORTHO05D008388 8.7e-19 97.1 69 76.8
PRCOL_00006130 Prasinoderma coloniale HOM05D006678 ORTHO05D008388 1.1e-16 90.1 106 48.1
Sc06g0002530 Simmondsia chinensis HOM05D002239 ORTHO05D002408 4.4e-15 84.7 68 63.2
Cre03.g178250 Chlamydomonas reinhardtii HOM05D006678 ORTHO05D008388 7.6e-15 84.0 74 56.8
Zm00001eb415610 Zea mays HOM05D006678 ORTHO05D008388 1.5e-10 69.7 69 56.5
CBR_g6679 Chara braunii HOM05D006678 ORTHO05D008388 3.6e-09 65.1 35 74.3


User provided reference genes

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