Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 1.2e-52 209.5 106 100.0
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 1.3e-38 162.9 106 76.4
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 4.7e-36 154.5 106 72.6
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 1.2e-34 149.8 106 69.8
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 2.0e-34 149.1 100 75.0
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 2.0e-34 149.1 105 70.5
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 2.0e-34 149.1 100 75.0
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 4.4e-34 147.9 105 70.5
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 5.7e-34 147.5 106 68.9
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 7.5e-34 147.1 106 69.8
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 1.3e-33 146.4 106 68.9
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 1.7e-33 146.0 99 71.7
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 2.2e-33 145.6 106 67.0
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 2.2e-33 145.6 98 69.4
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 2.2e-33 145.6 106 68.9
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 3.7e-33 144.8 103 67.0
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 4.9e-33 144.4 97 72.2
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 8.3e-33 143.7 106 68.9
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 1.1e-32 143.3 106 68.9
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 1.1e-32 143.3 97 70.1
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 1.4e-32 142.9 106 67.9
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 2.4e-32 142.1 106 67.0
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 2.4e-32 142.1 106 67.0
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 2.4e-32 142.1 106 67.0
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.2e-32 141.7 107 67.3
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 7.0e-32 140.6 104 65.4
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 7.0e-32 140.6 106 68.9
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 9.2e-32 140.2 102 67.6
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.2e-31 139.8 107 66.4
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 1.6e-31 139.4 106 65.1
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 2.0e-31 139.0 106 67.9
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 2.0e-31 139.0 84 77.4
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 2.7e-31 138.7 85 76.5
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 2.7e-31 138.7 100 69.0
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 5.9e-31 137.5 106 67.0
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 7.8e-31 137.1 84 76.2
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 7.8e-31 137.1 84 76.2
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 7.8e-31 137.1 106 67.9
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.0e-30 136.7 102 66.7
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 1.3e-30 136.3 106 67.0
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 1.7e-30 136.0 104 65.4
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 2.3e-30 135.6 88 73.9
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 2.3e-30 135.6 102 66.7
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 3.0e-30 135.2 100 65.0
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 3.0e-30 135.2 102 66.7
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 3.9e-30 134.8 99 65.7
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 5.0e-30 134.4 105 64.8
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 5.0e-30 134.4 102 63.7
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 5.0e-30 134.4 102 64.7
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 8.6e-30 133.7 107 62.6
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 8.6e-30 133.7 102 62.7
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 8.6e-30 133.7 84 75.0
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.1e-29 133.3 106 60.4
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.5e-29 132.9 106 61.3
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 2.5e-29 132.1 106 62.3
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 2.5e-29 132.1 100 68.0
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 2.5e-29 132.1 87 72.4
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 3.3e-29 131.7 87 73.6
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 3.3e-29 131.7 92 72.8
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 4.3e-29 131.3 100 67.0
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 5.6e-29 131.0 99 65.7
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 7.3e-29 130.6 87 72.4
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 9.5e-29 130.2 106 61.3
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 1.2e-28 129.8 106 60.4
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 1.6e-28 129.4 100 65.0
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 2.1e-28 129.0 100 62.0
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 2.1e-28 129.0 100 62.0
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 2.8e-28 128.6 105 61.9
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 8.0e-28 127.1 105 61.0
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 8.0e-28 127.1 102 60.8
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 1.0e-27 126.7 83 73.5
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 1.0e-27 126.7 102 60.8
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 5.2e-27 124.4 102 61.8
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 8.9e-27 123.6 101 63.4
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 8.9e-27 123.6 99 60.6
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 1.2e-26 123.2 93 61.3
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 1.5e-26 122.9 106 60.4
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 2.6e-26 122.1 88 63.6
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 3.4e-26 121.7 100 58.0
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 4.4e-26 121.3 106 57.5
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 4.4e-26 121.3 106 57.5
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 4.4e-26 121.3 106 57.5
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 4.4e-26 121.3 106 57.5
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 4.4e-26 121.3 106 57.5
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 4.4e-26 121.3 87 69.0
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 5.8e-26 120.9 88 64.8
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 7.5e-26 120.6 107 57.0
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 9.8e-26 120.2 84 66.7
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 1.3e-25 119.8 106 57.5
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 1.3e-25 119.8 98 59.2
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 1.3e-25 119.8 84 65.5
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 1.1e-24 116.7 86 61.6
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 1.4e-24 116.3 84 64.3
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 1.9e-24 115.9 110 54.5
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 4.1e-24 114.8 89 64.0
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 4.1e-24 114.8 91 62.6
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 6.0e-23 110.9 103 59.2
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 1.7e-22 109.4 106 50.0
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 2.3e-22 109.0 80 66.2
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 1.1e-21 106.7 80 65.0
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 3.3e-21 105.1 77 67.5
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 5.6e-21 104.4 83 61.4
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 1.6e-20 102.8 85 58.8
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 8.1e-20 100.5 63 76.2
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 7.5e-18 94.0 86 47.7
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.7e-17 92.8 86 46.5
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.9e-16 89.4 106 45.3
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 3.2e-16 88.6 87 48.3
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 9.2e-16 87.0 96 40.6
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 7.3e-13 77.4 71 49.3
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 1.8e-11 72.8 84 40.5
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 2.3e-11 72.4 84 41.7
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 1.5e-10 69.7 84 42.9
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 4.9e-09 64.7 80 40.0


User provided reference genes

Program Settings