Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.4e-59 229.9 113 100.0
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 9.5e-27 123.6 94 68.1
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.2e-26 123.2 95 64.2
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 8.0e-26 120.6 101 60.4
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.3e-25 119.0 110 60.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.0e-24 115.9 100 64.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 2.0e-24 115.9 80 70.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.4e-24 115.2 90 67.8
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 3.7e-23 111.7 112 55.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 6.4e-23 110.9 75 69.3
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.4e-22 109.8 79 68.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 2.4e-22 109.0 95 63.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.1e-22 108.2 90 64.4
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.1e-22 108.2 92 62.0
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.4e-22 107.8 90 64.4
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 5.4e-22 107.8 95 57.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.7e-21 105.5 81 67.9
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.6e-21 104.8 90 63.3
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 7.8e-21 104.0 90 58.9
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.0e-20 103.6 97 57.7
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.0e-20 103.6 87 63.2
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.3e-20 103.2 105 54.3
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.0e-20 102.1 91 57.1
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 5.0e-20 101.3 71 67.6
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 5.0e-20 101.3 71 67.6
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 5.0e-20 101.3 87 63.2
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-19 100.1 110 50.9
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.1e-19 100.1 93 55.9
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-19 99.4 66 66.7
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.9e-19 99.4 71 67.6
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.3e-19 97.4 91 59.3
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 7.3e-19 97.4 95 53.7
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.2e-18 96.7 92 58.7
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 2.1e-18 95.9 93 58.1
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.8e-18 95.5 64 71.9
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.8e-18 95.5 83 63.9
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.4e-17 93.2 90 48.9
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.4e-17 93.2 92 50.0
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.3e-17 92.4 96 50.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 8.9e-17 90.5 94 54.3
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.9e-17 90.5 75 57.3
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 8.9e-17 90.5 88 55.7
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.2e-16 90.1 92 53.3
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.5e-16 89.7 73 57.5
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.5e-16 89.7 74 63.5
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.0e-16 89.4 103 47.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.6e-16 89.0 90 50.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 3.4e-16 88.6 78 62.8
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.4e-16 88.6 74 58.1
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 4.4e-16 88.2 80 53.8
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.4e-16 88.2 68 58.8
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.4e-16 88.2 98 52.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 5.8e-16 87.8 63 61.9
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 7.5e-16 87.4 84 51.2
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 7.5e-16 87.4 75 52.0
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 7.5e-16 87.4 79 51.9
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 7.5e-16 87.4 91 52.7
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 9.8e-16 87.0 75 52.0
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 9.8e-16 87.0 75 56.0
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.8e-16 87.0 107 43.9
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.8e-16 87.0 107 43.9
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 9.8e-16 87.0 76 56.6
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.3e-15 86.7 107 43.9
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.3e-15 86.7 99 48.5
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-15 86.7 78 53.8
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.3e-15 86.7 80 55.0
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.3e-15 86.7 71 56.3
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.7e-15 86.3 87 52.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.7e-15 86.3 87 52.9
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.2e-15 85.9 91 46.2
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.2e-15 85.9 71 54.9
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.9e-15 85.5 98 48.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.7e-15 85.1 76 52.6
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 4.9e-15 84.7 90 46.7
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 6.4e-15 84.3 75 53.3
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 8.3e-15 84.0 79 57.0
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.1e-14 83.6 93 48.4
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.1e-14 83.6 59 69.5
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.9e-14 82.8 109 45.9
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.9e-14 82.8 88 54.5
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.4e-14 82.4 102 47.1
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 2.4e-14 82.4 83 54.2
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.4e-14 82.4 92 47.8
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.4e-14 82.4 89 46.1
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 3.2e-14 82.0 68 58.8
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 3.2e-14 82.0 81 49.4
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 4.1e-14 81.6 100 46.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.1e-14 81.6 60 61.7
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.1e-14 81.6 96 47.9
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.1e-14 81.6 95 49.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 4.1e-14 81.6 109 45.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.4e-14 81.3 68 54.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.4e-14 81.3 92 47.8
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 9.2e-14 80.5 86 50.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.2e-13 80.1 91 50.5
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.2e-13 80.1 64 53.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.6e-13 79.7 83 48.2
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.6e-13 79.7 84 46.4
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.6e-13 79.7 87 48.3
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.6e-13 79.7 94 47.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-13 79.3 81 48.1
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.0e-13 79.3 102 41.2
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.0e-13 79.3 86 48.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.7e-13 79.0 88 50.0
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.0e-13 77.8 83 45.8
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.0e-13 77.8 109 45.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.8e-13 77.4 72 54.2
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 7.8e-13 77.4 92 43.5
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 7.8e-13 77.4 75 57.3
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 7.8e-13 77.4 83 47.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 7.8e-13 77.4 86 44.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.0e-12 77.0 93 44.1
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.0e-12 77.0 95 43.2
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.0e-12 77.0 71 56.3
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.0e-12 77.0 109 44.0
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.7e-12 76.3 86 46.5
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.3e-12 75.9 64 53.1
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 3.0e-12 75.5 79 51.9
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 8.6e-12 73.9 88 43.2
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 88 45.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 79 50.6
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.1e-11 73.6 62 59.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.5e-11 73.2 75 50.7
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.5e-11 72.4 63 52.4
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 3.3e-11 72.0 68 51.5
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.3e-11 72.0 79 49.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.3e-11 72.0 103 41.7
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.3e-11 70.9 79 48.1
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.2e-10 70.1 68 47.1
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 8.1e-10 67.4 92 43.5
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.8e-09 66.2 59 49.2
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 3.1e-09 65.5 81 39.5
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.2e-09 64.7 81 39.5
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.2e-09 64.7 81 39.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 8.9e-09 63.9 82 39.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 8.9e-09 63.9 77 40.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 8.9e-09 63.9 42 61.9
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.2e-08 63.5 38 71.1
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.2e-08 63.5 81 37.0
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-08 63.5 91 42.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.5e-08 63.2 66 42.4
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.0e-08 62.8 76 43.4
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.6e-08 62.4 91 42.9
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.5e-08 60.8 57 52.6
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 9.9e-08 60.5 57 42.1
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.9e-07 58.2 38 68.4
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 6.4e-07 57.8 87 41.4
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.2e-06 55.5 73 43.8
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 7.1e-06 54.3 35 62.9


User provided reference genes

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