Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 1.6e-58 229.2 115 100.0
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 1.4e-33 146.4 107 67.3
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 9.0e-33 143.7 111 66.7
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 2.6e-32 142.1 95 71.6
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 3.4e-32 141.7 108 66.7
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 4.5e-32 141.4 94 77.7
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 1.7e-31 139.4 113 65.5
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 1.6e-29 132.9 104 63.5
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 3.5e-29 131.7 93 71.0
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 3.5e-29 131.7 104 64.4
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 3.9e-28 128.3 93 68.8
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 3.9e-28 128.3 93 68.8
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 5.1e-28 127.9 106 62.3
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 6.7e-28 127.5 103 61.2
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 6.7e-28 127.5 111 60.4
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 8.7e-28 127.1 111 58.6
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 8.7e-28 127.1 104 59.6
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 1.9e-27 125.9 89 68.5
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 2.5e-27 125.6 95 66.3
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 3.3e-27 125.2 88 67.0
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 1.3e-26 123.2 92 68.5
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 1.3e-26 123.2 92 68.5
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 1.6e-26 122.9 108 59.3
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 3.7e-26 121.7 105 60.0
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 4.8e-26 121.3 110 58.2
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 6.3e-26 120.9 104 59.6
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 6.3e-26 120.9 104 59.6
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 6.3e-26 120.9 104 59.6
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 1.1e-25 120.2 88 67.0
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 3.1e-25 118.6 89 65.2
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 5.3e-25 117.9 108 54.6
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 2.0e-24 115.9 95 58.9
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 4.5e-24 114.8 94 57.4
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 2.9e-23 112.1 87 62.1
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 2.9e-23 112.1 87 62.1
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 1.1e-22 110.2 91 58.2
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 1.4e-22 109.8 100 56.0
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.9e-22 109.4 78 67.9
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 1.9e-22 109.4 95 61.1
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 1.9e-22 109.4 90 62.2
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 2.5e-22 109.0 104 53.8
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 2.5e-22 109.0 88 59.1
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 7.2e-22 107.5 93 57.0
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 1.6e-21 106.3 80 62.5
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 4.6e-21 104.8 105 50.5
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 4.6e-21 104.8 95 56.8
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 6.1e-21 104.4 105 53.3
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 6.1e-21 104.4 105 52.4
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 1.8e-20 102.8 84 58.3
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 2.3e-20 102.4 68 72.1
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 3.9e-20 101.7 95 55.8
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 4.3e-19 98.2 105 49.5
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 4.3e-19 98.2 109 47.7
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 1.3e-18 96.7 69 68.1
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 1.6e-18 96.3 59 74.6
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.2e-18 95.9 94 54.3
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 2.8e-18 95.5 59 74.6
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.8e-18 95.5 62 72.6
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 2.8e-18 95.5 76 61.8
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 3.7e-18 95.1 57 73.7
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 3.7e-18 95.1 74 66.2
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 4.8e-18 94.7 95 50.5
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 6.3e-18 94.4 59 72.9
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 8.2e-18 94.0 62 67.7
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 1.4e-17 93.2 57 71.9
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 1.8e-17 92.8 71 66.2
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 5.3e-17 91.3 61 67.2
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 6.9e-17 90.9 57 68.4
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 9.0e-17 90.5 55 76.4
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 2.6e-16 89.0 98 45.9
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 2.6e-16 89.0 67 68.7
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 7.7e-16 87.4 75 58.7
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 2.2e-15 85.9 121 42.1
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 3.8e-15 85.1 67 52.2
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 4.2e-14 81.6 88 44.3
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 4.6e-13 78.2 76 46.1
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 6.1e-13 77.8 153 35.9
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.9e-12 75.1 71 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 6.7e-12 74.3 76 48.7
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 5.7e-11 71.2 128 35.2
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 2.8e-10 68.9 38 78.9
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 3.7e-10 68.6 41 75.6
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.1e-09 67.0 38 76.3
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 1.4e-09 66.6 81 40.7
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 1.2e-08 63.5 69 47.8
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 1.3e-07 60.1 35 71.4
AagrBONN_evm.TU.Sc2ySwM_344.3283 Anthoceros agrestis HOM05D007718 ORTHO05D009752 1.9e-06 56.2 61 45.9


User provided reference genes

Program Settings