Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.1e-66 255.0 130 100.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 7.0e-58 227.3 127 86.6
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.6e-57 226.1 127 86.6
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 4.5e-57 224.6 131 85.5
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.3e-56 223.0 127 85.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.3e-56 223.0 128 84.4
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 86.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 86.6
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 85.0
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.7e-56 222.6 130 83.8
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.3e-56 222.2 124 87.1
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.9e-56 221.9 127 85.8
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.9e-56 221.9 127 83.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 3.8e-56 221.5 127 83.5
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 3.8e-56 221.5 127 83.5
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 5.0e-56 221.1 128 85.2
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.0e-56 221.1 124 86.3
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.0e-56 221.1 124 85.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 6.6e-56 220.7 128 85.2
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.6e-56 220.7 127 84.3
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 8.6e-56 220.3 130 85.4
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.1e-55 219.9 128 83.6
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.5e-55 219.5 127 83.5
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.5e-55 219.5 130 83.8
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.9e-55 219.2 127 82.7
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.9e-55 219.2 130 82.3
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.9e-55 219.2 130 83.8
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.3e-55 218.4 124 84.7
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.3e-55 218.4 129 83.7
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 3.3e-55 218.4 130 83.8
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 4.2e-55 218.0 127 83.5
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 7.2e-55 217.2 125 84.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 7.2e-55 217.2 128 84.4
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.5e-55 216.9 130 82.3
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 9.5e-55 216.9 127 82.7
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.2e-54 216.5 130 83.1
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.6e-54 216.1 127 82.7
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.6e-54 216.1 127 83.5
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-54 216.1 127 83.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.8e-54 215.3 129 84.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.8e-54 215.3 128 80.5
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 81.9
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 81.9
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 3.6e-54 214.9 127 81.9
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.6e-54 214.9 130 81.5
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.6e-54 214.9 130 81.5
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 131 81.7
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 82.7
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 82.7
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 125 83.2
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 82.7
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 82.7
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.8e-53 212.6 129 81.4
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.3e-53 212.2 129 81.4
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 80.3
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 3.0e-53 211.8 122 82.8
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 4.0e-53 211.5 129 79.1
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 5.2e-53 211.1 118 86.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 5.2e-53 211.1 129 78.3
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 6.8e-53 210.7 118 86.4
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 6.8e-53 210.7 129 77.5
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.8e-53 210.7 128 78.1
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.2e-52 209.9 125 80.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-52 209.9 127 81.9
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.2e-52 209.9 129 77.5
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.5e-52 209.5 129 80.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.5e-52 209.5 129 79.8
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.5e-52 209.5 129 79.8
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 2.0e-52 209.1 129 81.4
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.0e-52 209.1 129 79.8
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 3.4e-52 208.4 129 80.6
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 4.4e-52 208.0 124 79.8
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 81.1
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 5.7e-52 207.6 130 79.2
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 80.3
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 9.8e-52 206.8 128 76.6
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 129 79.1
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.7e-51 206.1 128 78.9
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.8e-51 205.3 128 78.9
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.8e-51 205.3 128 78.9
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 2.8e-51 205.3 125 80.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 78.1
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 78.9
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 4.9e-51 204.5 128 78.9
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.9e-51 204.5 129 78.3
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 129 79.8
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 78.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 8.3e-51 203.8 128 78.9
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 8.3e-51 203.8 128 78.9
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 8.3e-51 203.8 128 78.9
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 128 78.1
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.8e-50 202.6 128 78.1
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.8e-50 202.6 128 78.1
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.8e-50 202.6 128 78.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.1e-50 201.8 130 74.6
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 78.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 78.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 78.0
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 4.1e-50 201.4 129 78.3
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 5.4e-50 201.1 129 77.5
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 9.2e-50 200.3 127 76.4
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 77.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.9e-49 197.6 128 75.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 7.8e-49 197.2 129 76.7
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 2.3e-48 195.7 127 77.2
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.9e-48 194.9 129 76.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.5e-47 192.2 127 73.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 4.7e-46 188.0 129 69.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.8e-45 186.0 172 59.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.0e-45 184.9 106 84.0
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.2e-45 184.5 125 75.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 7.5e-44 180.6 109 75.2
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 5.0e-40 167.9 128 68.0
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 3.1e-37 158.7 112 69.6
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 8.3e-35 150.6 89 84.3
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.1e-34 150.2 109 71.6
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.1e-32 141.4 82 79.3
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.2e-30 136.7 82 78.0
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 9.9e-28 127.1 98 64.3
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 3.7e-27 125.2 79 78.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.7e-24 116.3 81 72.8
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 8.6e-24 114.0 89 64.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.9e-23 112.8 130 53.1
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 2.5e-23 112.5 88 58.0
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.4e-21 106.7 70 74.3
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.4e-20 102.1 70 72.9
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.8e-20 101.3 61 80.3
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 3.2e-18 95.5 82 57.3
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 7.1e-18 94.4 57 80.7
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.9e-15 86.3 51 84.3
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.3e-14 83.6 116 50.0
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 3.6e-14 82.0 99 46.5
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.0e-08 63.9 59 49.2
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.3e-08 63.5 36 83.3
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.1e-06 56.2 40 65.0


User provided reference genes

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