Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.1e-77 293.1 141 100.0
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 3.3e-69 265.0 142 89.4
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.1e-68 262.3 141 87.9
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 6.2e-68 260.8 141 88.7
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 6.2e-68 260.8 141 87.2
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 8.1e-68 260.4 141 88.7
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 8.1e-68 260.4 141 88.7
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 8.1e-68 260.4 141 88.7
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 1.8e-67 259.2 141 87.2
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 5.2e-67 257.7 141 86.5
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 5.2e-67 257.7 141 86.5
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 2.0e-66 255.8 141 86.5
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 5.8e-66 254.2 141 85.8
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 5.8e-66 254.2 141 84.4
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 7.6e-66 253.8 141 83.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.3e-65 253.1 141 85.1
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.3e-65 253.1 143 86.0
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.3e-65 253.1 141 84.4
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.3e-65 253.1 141 83.7
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.7e-65 252.7 141 83.7
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 3.8e-65 251.5 141 83.7
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 6.4e-65 250.8 141 83.0
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 6.4e-65 250.8 141 83.7
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.1e-64 250.0 141 82.3
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.4e-64 249.6 140 82.9
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.9e-64 249.2 141 84.4
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 3.2e-64 248.4 141 84.4
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 3.2e-64 248.4 141 83.7
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 3.2e-64 248.4 140 84.3
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 4.2e-64 248.1 141 81.6
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 4.2e-64 248.1 141 85.1
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 5.4e-64 247.7 141 82.3
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 5.4e-64 247.7 141 83.0
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 5.4e-64 247.7 141 83.0
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 5.4e-64 247.7 141 83.0
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 5.4e-64 247.7 141 82.3
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 9.3e-64 246.9 142 83.1
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.2e-63 246.5 141 83.0
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.2e-63 246.5 141 80.9
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.6e-63 246.1 141 82.3
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.7e-63 245.4 141 82.3
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 2.7e-63 245.4 138 84.1
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 3.5e-63 245.0 141 82.3
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 3.5e-63 245.0 141 82.3
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 3.5e-63 245.0 140 80.7
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 3.5e-63 245.0 141 81.6
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 4.6e-63 244.6 140 82.1
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 4.6e-63 244.6 141 81.6
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 6.0e-63 244.2 141 80.9
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 6.0e-63 244.2 138 83.3
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 1.0e-62 243.4 141 80.1
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 1.0e-62 243.4 141 80.1
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.3e-62 243.0 140 79.3
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.7e-62 242.7 141 80.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.3e-62 242.3 141 79.4
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 3.0e-62 241.9 141 80.1
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 3.0e-62 241.9 141 80.1
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 3.0e-62 241.9 141 80.1
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 3.0e-62 241.9 141 80.1
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 8.7e-62 240.4 142 79.6
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 8.7e-62 240.4 138 81.9
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.1e-61 240.0 141 80.1
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.5e-61 238.8 141 78.0
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 3.3e-61 238.4 141 79.4
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 4.3e-61 238.0 141 79.4
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 9.6e-61 236.9 141 78.7
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 9.6e-61 236.9 141 77.3
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.6e-60 236.1 137 78.8
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 2.1e-60 235.7 141 78.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.6e-60 235.0 140 79.3
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 8.1e-60 233.8 141 77.3
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 2.4e-59 232.3 141 75.9
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 1.5e-58 229.6 143 76.9
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 2.6e-58 228.8 142 76.1
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.4e-58 228.4 158 70.9
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.8e-57 224.9 144 76.4
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 6.4e-57 224.2 140 72.1
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.2e-56 221.9 151 75.5
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.6e-55 219.5 131 78.6
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.5e-53 213.0 130 80.0
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 3.3e-53 211.8 159 66.0
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.6e-52 209.5 137 71.5
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 4.0e-51 204.9 140 68.6
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 7.6e-50 200.7 140 67.9
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.8e-49 198.4 133 66.9
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 6.4e-49 197.6 107 88.8
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.9e-48 196.1 133 66.2
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.1e-47 192.6 134 64.9
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.8e-46 189.5 141 70.2
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 3.9e-46 188.3 109 80.7
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 5.1e-46 188.0 138 68.1
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.1e-45 186.8 108 82.4
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.4e-43 179.9 107 78.5
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 9.0e-43 177.2 108 75.0
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.0e-38 163.7 107 72.9
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 6.7e-38 161.0 123 64.2
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 4.5e-34 148.3 89 80.9
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.9e-33 145.6 86 82.6
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 3.8e-33 145.2 85 75.3
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 8.5e-33 144.1 137 53.3
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.4e-32 143.3 85 74.1
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 1.2e-31 140.2 86 81.4
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 8.7e-30 134.0 111 59.5
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.1e-29 133.7 141 49.6
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 3.1e-27 125.6 195 39.5
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 8.5e-25 117.5 86 64.0
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 3.6e-23 112.1 55 85.5
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 6.7e-22 107.8 132 44.7
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 8.2e-20 100.9 141 40.4
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.2e-17 92.8 82 54.9
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.2e-09 66.2 34 85.3
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 2.2e-09 66.2 33 90.9
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 8.5e-09 64.3 42 76.2
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 1.5e-08 63.5 140 28.6
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 1.5e-08 63.5 140 30.7
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 1.9e-08 63.2 147 27.9
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 3.2e-08 62.4 141 29.1
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 5.5e-08 61.6 141 31.9
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 5.5e-08 61.6 44 61.4
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 9.4e-08 60.8 34 85.3
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 2.7e-07 59.3 141 31.2
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 2.7e-07 59.3 142 31.0
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 3.6e-07 58.9 106 30.2
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 6.1e-07 58.2 149 26.8
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 8.0e-07 57.8 143 28.0
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 1.0e-06 57.4 105 31.4
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 1.8e-06 56.6 141 28.4
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 2.3e-06 56.2 105 29.5
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 3.0e-06 55.8 109 29.4
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 3.0e-06 55.8 142 27.5
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 5.2e-06 55.1 140 28.6
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 6.7e-06 54.7 141 27.0
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 6.7e-06 54.7 105 29.5
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 8.8e-06 54.3 141 27.7
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 8.8e-06 54.3 141 29.8


User provided reference genes

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