Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 6.0e-117 424.1 201 100.0
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 5.9e-80 301.2 199 71.9
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.0e-79 300.4 200 71.0
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 5.0e-79 298.1 200 70.5
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 5.0e-79 298.1 200 70.5
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 5.0e-79 298.1 198 68.7
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 8.5e-79 297.4 198 69.7
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 8.5e-79 297.4 199 70.4
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 1.1e-78 297.0 200 70.5
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 3.2e-78 295.4 199 70.9
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 3.2e-78 295.4 199 67.8
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 1.2e-77 293.5 198 69.7
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 1.2e-77 293.5 199 67.8
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 3.6e-77 292.0 198 66.7
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 8.0e-77 290.8 192 68.8
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.8e-76 289.7 199 67.3
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 3.0e-76 288.9 199 67.3
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 4.0e-76 288.5 200 68.5
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 6.7e-76 287.7 193 69.4
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 2.0e-75 286.2 186 70.4
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.0e-75 286.2 200 68.0
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 2.0e-75 286.2 200 68.0
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.4e-75 285.0 191 70.7
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.4e-75 285.0 191 70.7
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 5.7e-75 284.6 199 65.8
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 9.7e-75 283.9 218 64.2
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 9.7e-75 283.9 194 68.6
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 1.3e-74 283.5 200 67.0
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 1.3e-74 283.5 203 65.5
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 2.8e-74 282.3 194 68.0
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 3.7e-74 282.0 200 67.5
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 6.3e-74 281.2 190 68.4
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 6.3e-74 281.2 199 67.8
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 8.2e-74 280.8 199 68.8
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 2.4e-73 279.3 194 68.6
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 2.4e-73 279.3 192 69.8
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 3.1e-73 278.9 199 64.8
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 5.3e-73 278.1 199 62.8
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 7.0e-73 277.7 184 72.3
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 7.0e-73 277.7 194 67.0
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 7.0e-73 277.7 191 68.6
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 1.6e-72 276.6 181 70.2
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 1.6e-72 276.6 181 70.2
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.0e-72 276.2 200 66.0
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 2.7e-72 275.8 198 64.1
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 2.7e-72 275.8 195 67.2
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 3.5e-72 275.4 200 65.0
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 4.5e-72 275.0 194 67.5
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 4.5e-72 275.0 195 66.2
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.0e-71 273.9 199 63.8
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 5.0e-71 271.6 191 68.1
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 1.1e-70 270.4 199 63.8
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 1.1e-70 270.4 191 66.5
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 1.5e-70 270.0 199 63.8
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.9e-70 269.6 199 62.3
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 2.5e-70 269.2 199 63.8
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 5.5e-70 268.1 194 64.9
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 7.2e-70 267.7 191 65.4
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 9.4e-70 267.3 199 61.8
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 9.4e-70 267.3 199 61.3
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 9.4e-70 267.3 199 61.3
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 1.2e-69 266.9 200 65.0
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 2.1e-69 266.2 199 62.8
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 2.1e-69 266.2 194 62.9
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 3.6e-69 265.4 201 65.7
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 3.6e-69 265.4 195 61.5
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 1.0e-68 263.8 199 61.8
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 1.0e-68 263.8 196 62.8
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 1.5e-67 260.0 199 62.3
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.6e-67 259.2 193 63.2
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 4.4e-67 258.5 167 74.3
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 4.4e-67 258.5 200 62.0
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 5.7e-67 258.1 168 70.8
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 7.5e-67 257.7 195 60.0
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 1.3e-66 256.9 161 72.0
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.7e-66 256.5 196 62.2
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 6.3e-66 254.6 167 71.3
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 6.3e-66 254.6 198 61.1
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 2.4e-65 252.7 195 62.1
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 3.1e-65 252.3 194 59.8
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.1e-65 252.3 168 68.5
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 7.0e-65 251.1 192 60.9
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 3.5e-64 248.8 193 60.1
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 5.0e-63 245.0 199 58.3
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 1.0e-60 237.3 169 64.5
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 1.8e-60 236.5 199 57.8
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 6.8e-60 234.6 155 67.1
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 1.2e-59 233.8 194 51.5
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 3.7e-58 228.8 162 63.6
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 9.2e-57 224.2 167 65.9
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.6e-56 223.4 165 65.5
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 5.0e-55 218.4 221 50.2
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 3.6e-53 212.2 194 54.6
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 1.5e-51 206.8 199 53.8
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 9.2e-49 197.6 195 45.6
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 1.2e-48 197.2 194 46.9
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 6.0e-48 194.9 191 49.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.8e-48 194.5 183 49.2
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 1.7e-47 193.4 198 48.0
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.9e-47 192.2 133 66.2
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.9e-47 192.2 133 66.2
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 5.2e-44 181.8 126 63.5
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 2.9e-42 176.0 194 47.4
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.4e-41 172.9 104 72.1
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 3.0e-39 166.0 172 50.0
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 8.9e-36 154.5 224 37.5
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.7e-31 140.2 96 66.7
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 8.6e-31 137.9 92 68.5
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 3.1e-28 129.4 267 33.3
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 8.4e-26 121.3 91 60.4
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.7e-23 113.6 178 34.3
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 2.3e-23 113.2 110 48.2
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 6.6e-23 111.7 74 67.6
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.4e-17 94.0 70 61.4
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 1.9e-17 93.6 232 29.7
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 6.2e-13 78.6 116 31.0
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.8e-12 77.0 63 57.1
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 4.0e-12 75.9 48 77.1
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 1.2e-11 74.3 53 60.4
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 7.6e-11 71.6 56 57.1
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.9e-09 67.0 57 54.4


User provided reference genes

Program Settings