Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 4.9e-117 424.5 215 100.0
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.6e-59 233.4 218 61.0
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 3.4e-57 225.7 220 58.2
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 5.7e-57 224.9 218 60.6
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.3e-56 223.8 220 58.2
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 2.9e-56 222.6 226 57.1
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.9e-56 222.6 222 59.9
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.4e-55 220.3 225 59.6
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.4e-55 220.3 220 56.8
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 2.4e-55 219.5 219 60.3
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.6e-54 216.9 219 60.3
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 1.6e-54 216.9 223 57.4
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 2.3e-53 213.0 222 58.1
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 3.0e-53 212.6 228 57.5
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 5.0e-53 211.8 224 58.9
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 2.5e-52 209.5 211 58.3
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 5.6e-52 208.4 215 59.1
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 1.6e-51 206.8 221 56.1
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.8e-51 206.1 219 57.5
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.8e-51 206.1 198 62.1
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.8e-50 203.4 223 58.7
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 2.3e-50 203.0 216 56.5
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 5.2e-50 201.8 220 56.4
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 3.4e-49 199.1 220 57.3
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 9.8e-49 197.6 222 54.1
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 9.8e-49 197.6 164 65.9
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 1.3e-48 197.2 209 58.4
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.7e-48 196.8 188 59.0
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 8.3e-48 194.5 192 58.3
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.1e-47 194.1 223 52.9
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 3.2e-47 192.6 215 54.9
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 7.0e-47 191.4 220 53.6
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 9.2e-47 191.0 220 53.6
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 1.2e-46 190.7 204 55.4
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 1.6e-46 190.3 167 64.7
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.0e-45 187.6 219 53.9
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.3e-45 187.2 204 52.9
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 2.3e-45 186.4 215 54.9
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 3.0e-45 186.0 221 52.9
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 6.6e-45 184.9 216 50.5
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.6e-45 184.5 220 52.7
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.5e-44 183.7 219 53.0
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 1.9e-44 183.3 215 54.9
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-44 183.0 219 53.0
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 5.6e-44 181.8 217 52.1
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 7.3e-44 181.4 212 52.8
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 2.1e-43 179.9 225 50.7
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 2.8e-43 179.5 219 51.1
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 6.2e-43 178.3 141 65.2
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 8.1e-43 177.9 245 47.3
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.1e-42 177.6 162 59.3
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.4e-42 177.2 207 52.7
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.3e-42 176.4 210 52.9
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 4.0e-42 175.6 220 50.5
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.0e-42 175.6 220 50.5
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 6.8e-42 174.9 208 51.9
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 8.9e-42 174.5 167 58.1
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 3.4e-41 172.6 207 50.2
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.3e-40 170.6 207 49.3
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.2e-40 169.9 172 55.8
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.9e-40 169.5 216 51.4
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.9e-40 169.5 172 55.8
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 6.4e-40 168.3 201 50.7
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 8.3e-40 167.9 196 50.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-39 167.2 223 48.4
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.4e-39 167.2 223 48.4
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.4e-39 167.2 223 48.4
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-39 166.8 221 50.7
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.4e-39 166.4 226 50.0
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 4.1e-39 165.6 220 45.5
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 9.2e-39 164.5 223 47.5
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 2.7e-38 162.9 196 49.0
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 2.7e-38 162.9 117 69.2
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 3.5e-38 162.5 224 47.8
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 3.5e-38 162.5 224 49.1
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 3.5e-38 162.5 192 49.5
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 6.0e-38 161.8 227 49.8
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 6.0e-38 161.8 259 43.6
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 7.8e-38 161.4 228 49.6
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 7.8e-38 161.4 223 46.2
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.0e-37 161.0 181 51.4
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 3.9e-37 159.1 192 49.0
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 5.1e-37 158.7 223 48.9
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 1.1e-36 157.5 192 48.4
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 4.3e-36 155.6 254 42.9
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 2.8e-35 152.9 220 46.4
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 2.8e-35 152.9 220 46.4
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 4.7e-35 152.1 166 52.4
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 6.2e-35 151.8 216 48.6
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 8.1e-35 151.4 218 47.7
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 8.1e-35 151.4 216 48.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.1e-34 151.0 217 47.9
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 2.3e-34 149.8 169 52.7
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 3.1e-34 149.4 229 45.4
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 5.2e-34 148.7 161 49.7
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.2e-33 147.5 188 46.8
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.2e-33 147.5 252 43.7
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.0e-33 146.7 166 50.6
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 2.9e-32 142.9 218 46.3
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 2.9e-32 142.9 170 51.2
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 8.4e-32 141.4 149 50.3
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.1e-31 141.0 205 48.3
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 5.4e-31 138.7 216 44.9
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.3e-29 134.0 218 45.0
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 1.7e-29 133.7 94 69.1
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 1.7e-29 133.7 94 69.1
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 1.7e-29 133.7 94 69.1
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.3e-29 133.3 90 66.7
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.1e-28 131.0 159 47.8
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.4e-26 123.2 211 43.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 8.4e-24 114.8 86 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.1e-22 110.2 91 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.1e-22 110.2 91 60.4
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.3e-21 107.5 168 44.6
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.0e-21 106.3 215 39.5
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.6e-20 102.1 112 49.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.6e-19 100.5 191 40.3
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.4e-18 96.7 215 37.2
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 5.3e-18 95.5 146 37.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.4e-17 92.8 139 45.3
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.3e-16 90.9 195 37.9
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 3.8e-16 89.4 87 49.4
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 3.8e-16 89.4 87 49.4
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 4.8e-11 72.4 76 46.1
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 4.8e-11 72.4 70 48.6
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 6.9e-10 68.6 43 65.1
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 7.6e-09 65.1 194 32.0
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 2.4e-07 60.1 95 36.8
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 5.5e-07 58.9 105 35.2
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 7.1e-07 58.5 112 33.9
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 1.6e-06 57.4 36 69.4


User provided reference genes

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