Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.8e-123 445.3 224 100.0
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 2.8e-54 216.1 198 58.1
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.0e-52 209.9 194 56.2
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 9.9e-52 207.6 162 62.3
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 3.8e-51 205.7 197 56.9
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.9e-51 205.3 196 55.1
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.9e-51 205.3 196 55.1
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 6.4e-51 204.9 207 52.7
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 1.1e-50 204.1 200 56.5
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-49 200.7 196 54.6
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.2e-49 200.7 203 53.2
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 1.6e-49 200.3 197 53.3
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 3.5e-49 199.1 195 54.9
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 6.0e-49 198.4 196 53.6
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 6.0e-49 198.4 197 54.8
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 7.8e-49 198.0 198 53.0
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.0e-48 197.6 199 54.3
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.7e-48 196.8 196 55.1
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.7e-48 196.8 196 50.0
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 1.9e-47 193.4 195 53.8
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 7.3e-47 191.4 195 53.3
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.1e-46 189.9 194 52.6
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 2.1e-46 189.9 196 54.1
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 3.6e-46 189.1 201 48.8
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.1e-45 187.6 155 58.1
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.4e-45 187.2 198 53.0
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.8e-45 186.8 198 52.5
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.8e-45 186.8 193 53.9
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 6.9e-45 184.9 196 52.6
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 2.0e-44 183.3 196 52.6
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.0e-44 183.3 196 52.6
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.0e-44 183.3 198 52.0
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 3.4e-44 182.6 198 52.5
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-43 180.6 193 51.8
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.3e-43 180.6 198 49.5
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 1.7e-43 180.3 200 48.5
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.7e-43 180.3 197 49.7
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 8.4e-43 177.9 196 53.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.4e-42 177.2 199 46.7
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 2.4e-42 176.4 159 54.7
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 5.4e-42 175.3 166 54.2
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 7.1e-42 174.9 202 46.5
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 9.3e-42 174.5 196 50.0
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.6e-41 173.7 192 49.5
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.7e-41 172.9 159 52.8
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.7e-41 172.9 138 60.1
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.3e-40 169.9 153 54.9
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 3.9e-40 169.1 157 55.4
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 3.9e-40 169.1 165 49.7
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 5.1e-40 168.7 197 49.2
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 8.7e-40 167.9 158 51.9
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.9e-39 166.8 152 57.9
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.5e-39 166.4 198 46.5
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.5e-39 166.4 198 46.5
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 4.3e-39 165.6 199 46.7
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 9.6e-39 164.5 200 45.5
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.3e-38 164.1 195 51.8
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.3e-38 164.1 195 51.8
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.6e-38 163.7 163 50.3
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 2.1e-38 163.3 200 45.5
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.6e-38 162.5 159 54.7
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 8.1e-38 161.4 188 45.7
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.1e-37 161.0 209 46.4
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-37 160.2 198 44.9
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.8e-37 160.2 195 44.6
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 3.1e-37 159.5 199 45.2
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 6.9e-37 158.3 168 49.4
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 9.0e-37 157.9 161 48.4
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.5e-36 157.1 171 47.4
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.5e-36 157.1 158 47.5
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.5e-36 157.1 198 48.0
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 2.6e-36 156.4 201 43.3
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 3.4e-36 156.0 151 52.3
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 3.4e-36 156.0 133 60.2
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 4.5e-36 155.6 158 48.7
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 4.5e-36 155.6 169 48.5
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 9.9e-36 154.5 198 42.9
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 9.9e-36 154.5 163 47.2
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.3e-35 154.1 198 42.9
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.3e-35 154.1 139 54.0
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 2.4e-34 149.8 198 42.4
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 2.4e-34 149.8 198 42.4
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 5.5e-34 148.7 198 41.4
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 5.5e-34 148.7 161 44.1
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 7.1e-34 148.3 200 42.0
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 1.2e-33 147.5 183 42.1
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.6e-33 147.1 198 40.9
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 2.1e-33 146.7 163 44.8
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 6.7e-32 141.7 199 40.7
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 6.7e-32 141.7 199 40.7
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 6.7e-32 141.7 160 44.4
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 8.7e-32 141.4 186 43.5
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 8.7e-32 141.4 159 42.8
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.1e-31 141.0 195 43.6
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 4.3e-31 139.0 166 42.2
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 4.3e-31 139.0 196 41.3
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 4.3e-31 139.0 159 44.0
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 5.6e-31 138.7 159 44.7
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 7.4e-31 138.3 144 45.1
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 9.6e-31 137.9 155 46.5
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 9.6e-31 137.9 160 42.5
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 1.3e-30 137.5 161 43.5
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 2.1e-30 136.7 101 62.4
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.8e-30 136.3 158 43.7
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.8e-30 136.3 152 43.4
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 6.2e-30 135.2 173 42.8
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 6.2e-30 135.2 200 41.0
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.1e-29 134.4 160 41.9
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.4e-29 134.0 156 42.3
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.4e-29 134.0 158 42.4
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.1e-29 132.9 158 43.0
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 5.3e-29 132.1 142 47.9
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 5.3e-29 132.1 195 40.5
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.2e-28 131.0 162 41.4
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 3.4e-28 129.4 193 43.0
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.0e-27 127.9 142 42.3
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 1.3e-27 127.5 167 40.1
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.7e-27 127.1 191 37.2
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 4.9e-27 125.6 198 40.9
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.1e-26 124.4 186 40.3
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 1.4e-26 124.0 173 39.3
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.5e-26 123.2 196 40.3
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 5.5e-26 122.1 198 40.4
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 7.1e-26 121.7 157 40.8
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.2e-25 120.9 160 38.8
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.1e-25 120.2 158 38.6
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 3.5e-25 119.4 198 40.4
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 4.6e-25 119.0 156 41.7
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 1.8e-24 117.1 198 39.9
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.9e-24 115.9 154 42.2
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 3.9e-24 115.9 152 42.8
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.1e-24 115.5 162 36.4
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 6.7e-24 115.2 162 36.4
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 6.7e-24 115.2 146 39.7
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 8.7e-24 114.8 143 39.2
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.9e-23 113.6 162 35.8
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 9.6e-23 111.3 114 50.0
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 3.7e-22 109.4 181 37.6
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 4.8e-22 109.0 124 42.7
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 6.3e-22 108.6 118 43.2
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 6.9e-21 105.1 113 49.6
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 9.0e-21 104.8 156 36.5
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 2.5e-18 96.7 134 41.0
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 4.6e-17 92.4 165 35.2
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 6.1e-17 92.0 194 34.5
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 1.0e-16 91.3 155 34.2
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 3.9e-16 89.4 144 34.0
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 8.7e-16 88.2 196 36.2
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.5e-15 87.4 151 37.1
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 3.3e-15 86.3 111 41.4
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 4.8e-14 82.4 196 34.7
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 6.3e-14 82.0 206 35.0
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.5e-12 77.4 201 31.8
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.0e-12 77.0 208 29.8
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 4.5e-12 75.9 198 31.3
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 3.8e-11 72.8 158 36.7
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.0e-11 72.4 143 32.9
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 5.0e-11 72.4 132 37.1
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 8.5e-11 71.6 167 32.9
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.1e-10 71.2 142 33.1
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 4.2e-10 69.3 147 32.0
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.5e-10 68.9 124 33.9
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 9.4e-10 68.2 160 32.5
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-09 67.8 156 34.0
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.6e-09 67.4 135 31.9
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 7.9e-09 65.1 189 31.2
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.1e-08 62.4 143 29.4
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 8.8e-08 61.6 105 34.3


User provided reference genes

Program Settings