Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.2e-122 441.8 227 100.0
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 6.2e-110 401.0 227 89.0
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 4.0e-109 398.3 227 87.7
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 5.2e-109 397.9 227 87.2
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.2e-108 396.7 227 87.2
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 86.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 3.4e-108 395.2 226 88.5
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.4e-108 394.8 228 87.3
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 5.8e-108 394.4 227 86.8
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.9e-108 393.7 227 87.2
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.7e-107 392.9 227 86.3
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 85.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 86.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 86.8
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 86.3
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 6.4e-107 391.0 227 85.0
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 6.4e-107 391.0 227 85.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 6.4e-107 391.0 228 86.4
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 8.3e-107 390.6 227 84.1
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 85.5
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.3
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 85.0
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.9e-106 389.4 227 85.0
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.9e-106 389.4 228 86.8
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.9e-106 389.4 227 85.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 85.9
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 85.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 85.0
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.2e-105 386.7 228 86.4
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.6e-105 386.3 228 86.0
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 83.7
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 6.0e-105 384.4 227 84.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.7e-104 382.9 219 87.7
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 83.7
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 82.4
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 82.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 6.6e-104 380.9 228 83.8
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 85.5
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 83.7
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 8.6e-104 380.6 228 83.8
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 84.1
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 84.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.3e-103 378.3 227 83.3
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 5.6e-103 377.9 229 83.0
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 82.4
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 83.7
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 83.3
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 82.4
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.6e-102 376.3 217 86.6
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.6e-102 376.3 229 82.5
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 81.1
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 82.8
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 82.4
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.7e-102 374.8 217 86.6
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.7e-102 374.8 217 86.6
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 83.7
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 6.2e-102 374.4 229 83.8
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 8.1e-102 374.0 226 82.3
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-101 373.6 217 86.2
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 81.9
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.8e-101 372.9 217 85.7
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.5
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.1e-101 372.1 228 81.1
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 83.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 4.0e-101 371.7 222 82.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 4.0e-101 371.7 221 83.7
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.0e-101 371.7 214 86.0
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 5.2e-101 371.3 226 81.9
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 6.8e-101 370.9 216 85.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 81.9
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 8.9e-101 370.5 227 83.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.9e-101 370.5 214 85.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-100 370.2 226 81.9
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.5e-100 369.8 222 82.4
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.5
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.6e-100 369.0 226 81.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.6e-100 369.0 222 82.9
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 81.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 81.1
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 82.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 81.1
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.8e-100 367.9 220 85.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-99 366.7 218 84.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.3e-99 366.7 221 83.7
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.3e-99 366.7 233 79.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.3e-99 366.7 217 83.4
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.2e-99 365.9 228 82.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 4.9e-99 364.8 214 83.2
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 6.4e-99 364.4 228 80.7
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 8.4e-99 364.0 227 79.7
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.1e-98 363.6 222 82.4
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 79.7
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 7.1e-98 360.9 214 83.6
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 9.3e-98 360.5 207 86.5
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.2e-97 360.1 214 84.6
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.1e-97 359.4 227 78.4
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 7.8e-97 357.5 214 82.2
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 3.0e-96 355.5 206 85.0
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 3.0e-96 355.5 225 79.6
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 6.6e-96 354.4 215 80.0
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.5e-95 353.2 214 82.7
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 5.6e-95 351.3 214 80.4
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 9.6e-95 350.5 214 83.2
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 79.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.1e-94 349.4 259 71.4
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.6e-94 348.6 216 81.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 6.2e-94 347.8 205 82.9
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 3.1e-93 345.5 213 82.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.4e-92 342.0 227 76.7
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 7.6e-92 340.9 237 74.7
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 6.4e-91 337.8 210 81.9
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 4.6e-89 331.6 228 73.2
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.9e-87 326.2 191 83.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 2.8e-86 322.4 190 84.7
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 8.1e-86 320.9 227 74.4
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.8e-85 319.7 212 74.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-84 316.2 195 80.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.9e-82 309.7 195 77.4
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 3.3e-79 298.9 214 71.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 4.8e-78 295.0 222 70.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.0e-76 289.7 222 69.4
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 7.1e-74 281.2 216 67.1
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.0e-72 277.3 229 65.9
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.3e-72 276.9 164 84.1
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.8e-72 276.6 193 76.2
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 2.3e-72 276.2 227 67.4
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.5e-71 273.5 164 82.3
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.2e-68 263.8 209 65.1
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.0e-68 263.1 160 81.2
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 2.9e-67 259.2 197 70.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.9e-66 256.5 150 84.7
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 6.7e-64 248.1 153 79.1
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 7.4e-63 244.6 161 76.4
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.4e-61 240.4 237 53.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.6e-57 225.7 215 54.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 7.4e-55 218.0 131 78.6
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.9e-50 203.4 194 59.3
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 5.5e-42 175.3 108 79.6
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.3e-40 169.9 112 73.2
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.7e-40 168.3 115 73.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 5.7e-31 138.7 92 72.8
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.3e-30 135.2 87 78.2
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-29 132.9 109 67.0
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-26 124.4 113 61.9
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.6e-25 120.6 135 51.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.3e-19 100.1 63 74.6
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.6e-18 95.5 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.1e-17 92.0 97 52.6
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.7e-14 84.0 114 44.7
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.4e-14 82.0 70 64.3
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.2e-12 77.8 68 57.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.0e-11 74.7 208 28.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.2e-09 65.5 63 60.3
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 2.0e-07 60.5 147 30.6
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 2.9e-06 56.6 148 28.4
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 6.4e-06 55.5 148 27.0
Lsat_1_v5_gn_8_46420 Lactuca sativa HOM05D000094 ORTHO05D002350 6.4e-06 55.5 155 30.3
Oeu007087.1 Olea europaea HOM05D000166 ORTHO05D002123 6.4e-06 55.5 114 32.5
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 8.3e-06 55.1 152 27.6
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 8.3e-06 55.1 152 27.6


User provided reference genes

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