Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 4.7e-132 474.6 241 100.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.3e-110 402.5 246 84.1
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 6.1e-108 394.4 246 82.5
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.0e-108 394.0 246 81.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.0e-107 392.1 246 82.5
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.8e-107 391.0 246 82.1
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-106 389.8 246 80.9
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-106 389.4 246 81.7
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.7e-106 387.9 247 81.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.8e-106 387.1 246 80.5
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-104 383.6 246 80.1
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 6.6e-102 374.4 264 76.5
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 4.0e-99 365.2 247 78.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.5e-98 363.2 252 77.0
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.5e-98 363.2 243 79.8
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 3.4e-98 362.1 246 77.2
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 4.4e-98 361.7 248 76.6
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.3e-97 360.1 246 76.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.9e-97 359.0 246 76.8
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.7e-97 358.6 248 75.8
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 4.9e-97 358.2 250 76.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.9e-96 356.3 249 75.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 5.4e-96 354.8 249 75.1
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 5.4e-96 354.8 248 74.2
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 9.2e-96 354.0 247 76.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 9.2e-96 354.0 251 76.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.6e-95 353.2 254 74.4
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.6e-95 351.7 246 75.2
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.0e-95 351.3 246 74.0
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.3e-94 350.1 243 77.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.0e-94 349.0 248 75.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.9e-94 348.6 248 73.4
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.9e-94 348.6 250 75.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.9e-94 348.6 246 74.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.6e-94 347.4 249 74.7
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.6e-94 347.4 249 74.7
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.6e-94 347.4 248 75.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.6e-94 347.4 248 75.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.6e-94 347.4 248 75.4
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 8.6e-94 347.4 248 75.4
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.6e-94 347.4 248 74.2
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-93 347.1 248 75.4
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.1e-93 347.1 246 74.8
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.9e-93 346.3 248 73.8
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.9e-93 346.3 257 72.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.9e-93 346.3 248 74.6
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.9e-93 346.3 246 74.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.3e-93 345.5 244 74.6
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.6e-93 344.7 248 75.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 7.3e-93 344.4 248 75.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.3e-93 344.4 249 73.1
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 9.5e-93 344.0 249 73.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.6e-92 343.2 249 71.9
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.1e-92 342.8 247 74.5
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.1e-92 342.8 250 74.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.8e-92 342.4 251 72.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.6e-92 342.0 249 73.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-92 341.7 246 73.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 8.1e-92 340.9 253 71.1
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.3e-91 339.3 248 73.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.2e-91 338.2 248 73.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.6e-90 335.9 244 73.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.6e-90 335.9 243 74.5
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 3.4e-90 335.5 242 73.1
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.8e-90 334.7 241 71.8
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-89 333.2 246 70.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.9e-89 332.4 243 70.4
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.9e-88 329.7 251 70.9
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.9e-88 329.7 240 72.5
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.1e-88 328.6 247 68.4
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 4.1e-88 328.6 247 70.0
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 5.4e-88 328.2 247 70.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.2e-88 327.4 243 69.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.2e-87 327.0 247 70.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.2e-87 327.0 251 71.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.2e-87 327.0 251 70.1
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.1e-87 326.2 244 68.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.1e-87 326.2 238 70.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.5e-87 325.5 248 66.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.5e-87 325.5 242 68.6
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 6.0e-87 324.7 230 76.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 6.0e-87 324.7 250 70.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 7.8e-87 324.3 312 60.3
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.0e-86 323.9 238 72.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 249 69.9
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.3e-86 322.8 230 75.7
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.3e-86 322.8 245 67.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.3e-86 322.8 242 68.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.0e-86 322.4 249 69.9
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.0e-86 322.4 248 67.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.9e-86 322.0 250 70.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 5.1e-86 321.6 244 67.6
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 8.6e-86 320.9 256 69.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 8.6e-86 320.9 244 67.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.5e-85 320.1 243 67.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-85 319.7 237 71.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-85 319.7 237 72.6
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-85 319.7 244 66.8
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 7.3e-85 317.8 244 66.8
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 7.3e-85 317.8 256 68.0
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 9.5e-85 317.4 256 68.4
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.1e-84 316.2 254 68.9
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.1e-84 316.2 215 74.9
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.4e-83 313.5 232 72.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.3e-83 312.8 242 66.9
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 6.8e-83 311.2 238 72.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.5e-82 310.1 245 66.1
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.6e-82 309.3 241 70.1
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.4e-82 308.9 250 68.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.8e-82 308.1 251 66.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 7.6e-82 307.8 320 56.9
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.3e-81 307.0 240 65.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.2e-81 306.2 242 65.3
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.9e-81 305.1 244 68.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.4e-81 304.3 244 65.6
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.9e-80 303.1 233 70.4
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-80 302.4 249 64.7
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 7.1e-80 301.2 239 68.6
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 9.2e-80 300.8 238 67.6
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-79 300.4 217 71.4
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.1e-79 299.7 263 64.6
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.0e-79 298.1 235 68.5
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.3e-77 292.4 244 63.5
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.3e-77 292.4 244 63.5
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.3e-77 292.4 244 63.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.3e-77 291.2 220 68.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 7.3e-77 291.2 251 62.5
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.2e-76 288.1 204 71.6
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-75 287.3 244 62.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 9.9e-74 280.8 252 61.5
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.0e-71 271.6 249 57.8
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.5e-69 266.9 255 58.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.3e-69 265.4 238 60.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-69 265.0 227 63.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.3e-68 263.8 315 50.2
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.1e-68 263.1 250 57.2
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-67 260.8 237 64.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.3e-61 238.8 141 80.1
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.1e-59 234.2 246 53.7
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.9e-58 227.6 214 59.3
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.9e-57 226.1 148 73.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.9e-57 226.1 167 69.5
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.4e-56 223.8 136 77.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-56 223.0 167 68.3
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.3e-54 217.2 249 48.6
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 8.1e-52 208.0 246 50.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.7e-49 200.3 109 86.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.1e-47 193.4 243 48.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.7e-45 185.3 195 55.9
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.8e-44 183.0 117 78.6
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.1e-43 179.5 259 45.9
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 4.3e-37 159.1 127 70.9
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.4e-34 149.4 264 38.3
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.2e-32 142.9 129 65.9
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 7.2e-32 141.7 274 38.3
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.4e-27 127.5 107 65.4
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.2e-25 120.2 91 60.4
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 8.5e-25 118.2 95 58.9
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 9.4e-24 114.8 86 69.8
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.5e-21 107.5 69 72.5
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.8e-19 100.5 90 51.1
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.3e-17 94.4 73 68.5
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 8.5e-17 91.7 121 54.5
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 5.5e-16 89.0 73 64.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 3.6e-15 86.3 96 40.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.1e-11 73.2 92 55.4
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.1e-11 72.8 78 55.1
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.3e-11 72.4 81 48.1
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 7.0e-11 72.0 130 43.8
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.1e-07 60.5 159 28.3


User provided reference genes

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